Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbG and ybdO are separated by 209 nucleotides ybdO and ybdN are separated by 146 nucleotides
NIAGMN_05570: dsbG - thiol:disulfide interchange protein DsbG, at 1,020,997 to 1,021,743
dsbG
NIAGMN_05575: ybdO - Uncharacterized HTH-type transcriptional regulator YbdO, at 1,021,953 to 1,022,855
ybdO
NIAGMN_05580: ybdN - Uncharacterized protein YbdN, at 1,023,002 to 1,024,222
ybdN
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1020.995 kb on + strand at 1020.996 kb on - strand at 1021.147 kb on + strand, within dsbG at 1021.171 kb on + strand, within dsbG at 1021.207 kb on + strand, within dsbG at 1021.207 kb on + strand, within dsbG at 1021.208 kb on - strand, within dsbG at 1021.213 kb on + strand, within dsbG at 1021.213 kb on + strand, within dsbG at 1021.214 kb on - strand, within dsbG at 1021.240 kb on - strand, within dsbG at 1021.351 kb on + strand, within dsbG at 1021.383 kb on + strand, within dsbG at 1021.416 kb on - strand, within dsbG at 1021.430 kb on + strand, within dsbG at 1021.431 kb on - strand, within dsbG at 1021.554 kb on + strand, within dsbG at 1021.560 kb on - strand, within dsbG at 1021.581 kb on + strand, within dsbG at 1021.581 kb on + strand, within dsbG at 1021.657 kb on + strand, within dsbG at 1021.661 kb on - strand, within dsbG at 1021.678 kb on - strand at 1022.289 kb on - strand, within ybdO at 1022.292 kb on - strand, within ybdO at 1022.292 kb on - strand, within ybdO at 1023.008 kb on - strand at 1023.224 kb on + strand, within ybdN at 1023.224 kb on + strand, within ybdN at 1023.224 kb on + strand, within ybdN at 1023.248 kb on + strand, within ybdN at 1023.441 kb on + strand, within ybdN at 1023.515 kb on + strand, within ybdN at 1023.568 kb on + strand, within ybdN at 1023.602 kb on - strand, within ybdN at 1023.614 kb on + strand, within ybdN at 1023.689 kb on + strand, within ybdN at 1023.689 kb on + strand, within ybdN at 1023.691 kb on + strand, within ybdN at 1023.697 kb on - strand, within ybdN at 1023.701 kb on + strand, within ybdN at 1023.771 kb on + strand, within ybdN at 1023.779 kb on + strand, within ybdN at 1023.812 kb on - strand, within ybdN
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,020,995 + -0.3 1,020,996 - -2.0 1,021,147 + dsbG NIAGMN_05570 0.20 +0.4 1,021,171 + dsbG NIAGMN_05570 0.23 +0.0 1,021,207 + dsbG NIAGMN_05570 0.28 +0.2 1,021,207 + dsbG NIAGMN_05570 0.28 -0.2 1,021,208 - dsbG NIAGMN_05570 0.28 +2.0 1,021,213 + dsbG NIAGMN_05570 0.29 +0.7 1,021,213 + dsbG NIAGMN_05570 0.29 -0.8 1,021,214 - dsbG NIAGMN_05570 0.29 +0.1 1,021,240 - dsbG NIAGMN_05570 0.33 +1.2 1,021,351 + dsbG NIAGMN_05570 0.47 +0.1 1,021,383 + dsbG NIAGMN_05570 0.52 +0.4 1,021,416 - dsbG NIAGMN_05570 0.56 +0.5 1,021,430 + dsbG NIAGMN_05570 0.58 +0.2 1,021,431 - dsbG NIAGMN_05570 0.58 +0.7 1,021,554 + dsbG NIAGMN_05570 0.75 +0.7 1,021,560 - dsbG NIAGMN_05570 0.75 +1.0 1,021,581 + dsbG NIAGMN_05570 0.78 +0.7 1,021,581 + dsbG NIAGMN_05570 0.78 +1.0 1,021,657 + dsbG NIAGMN_05570 0.88 -0.4 1,021,661 - dsbG NIAGMN_05570 0.89 +1.2 1,021,678 - -1.2 1,022,289 - ybdO NIAGMN_05575 0.37 +0.1 1,022,292 - ybdO NIAGMN_05575 0.38 -0.0 1,022,292 - ybdO NIAGMN_05575 0.38 +0.6 1,023,008 - -0.4 1,023,224 + ybdN NIAGMN_05580 0.18 +0.0 1,023,224 + ybdN NIAGMN_05580 0.18 -0.9 1,023,224 + ybdN NIAGMN_05580 0.18 -0.1 1,023,248 + ybdN NIAGMN_05580 0.20 -1.9 1,023,441 + ybdN NIAGMN_05580 0.36 +0.1 1,023,515 + ybdN NIAGMN_05580 0.42 -0.6 1,023,568 + ybdN NIAGMN_05580 0.46 +1.8 1,023,602 - ybdN NIAGMN_05580 0.49 +0.8 1,023,614 + ybdN NIAGMN_05580 0.50 +0.6 1,023,689 + ybdN NIAGMN_05580 0.56 +0.4 1,023,689 + ybdN NIAGMN_05580 0.56 -1.3 1,023,691 + ybdN NIAGMN_05580 0.56 -0.1 1,023,697 - ybdN NIAGMN_05580 0.57 -0.6 1,023,701 + ybdN NIAGMN_05580 0.57 -0.1 1,023,771 + ybdN NIAGMN_05580 0.63 +1.1 1,023,779 + ybdN NIAGMN_05580 0.64 +0.5 1,023,812 - ybdN NIAGMN_05580 0.66 +0.4
Or see this region's nucleotide sequence