Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05040

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_05035 and abrB are separated by 148 nucleotidesabrB and nei overlap by 4 nucleotidesnei and pxpA are separated by 35 nucleotides NIAGMN_05035: NIAGMN_05035 - Fimbrial protein, at 915,415 to 916,476 _05035 NIAGMN_05040: abrB - Putative regulator AbrB, at 916,625 to 917,671 abrB NIAGMN_05045: nei - endonuclease VIII, at 917,668 to 918,459 nei NIAGMN_05050: pxpA - 5-oxoprolinase subunit PxpA, at 918,495 to 919,229 pxpA Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1at 915.718 kb on + strand, within NIAGMN_05035at 915.719 kb on - strand, within NIAGMN_05035at 915.734 kb on - strand, within NIAGMN_05035at 915.786 kb on + strand, within NIAGMN_05035at 915.799 kb on - strand, within NIAGMN_05035at 915.799 kb on - strand, within NIAGMN_05035at 915.840 kb on + strand, within NIAGMN_05035at 915.868 kb on - strand, within NIAGMN_05035at 916.231 kb on + strand, within NIAGMN_05035at 916.322 kb on - strand, within NIAGMN_05035at 916.337 kb on - strand, within NIAGMN_05035at 916.345 kb on + strand, within NIAGMN_05035at 916.345 kb on + strand, within NIAGMN_05035at 916.375 kb on + strandat 916.387 kb on + strandat 916.443 kb on + strandat 916.609 kb on - strandat 916.651 kb on - strandat 916.651 kb on - strandat 916.651 kb on - strandat 916.675 kb on + strandat 916.862 kb on - strand, within abrBat 916.878 kb on + strand, within abrBat 916.883 kb on - strand, within abrBat 916.887 kb on + strand, within abrBat 916.939 kb on + strand, within abrBat 916.939 kb on + strand, within abrBat 916.939 kb on + strand, within abrBat 916.939 kb on + strand, within abrBat 916.940 kb on - strand, within abrBat 917.141 kb on - strand, within abrBat 917.167 kb on + strand, within abrBat 917.168 kb on - strand, within abrBat 917.183 kb on - strand, within abrBat 917.305 kb on - strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.330 kb on + strand, within abrBat 917.331 kb on - strand, within abrBat 917.331 kb on - strand, within abrBat 917.331 kb on - strand, within abrBat 917.331 kb on - strand, within abrBat 917.331 kb on - strand, within abrBat 917.489 kb on - strand, within abrBat 917.499 kb on - strand, within abrBat 917.649 kb on - strandat 917.649 kb on - strandat 917.803 kb on - strand, within neiat 917.951 kb on + strand, within neiat 918.029 kb on - strand, within neiat 918.092 kb on - strand, within neiat 918.092 kb on - strand, within neiat 918.092 kb on - strand, within neiat 918.147 kb on + strand, within neiat 918.147 kb on + strand, within neiat 918.148 kb on - strand, within neiat 918.194 kb on - strand, within neiat 918.194 kb on - strand, within neiat 918.245 kb on + strand, within neiat 918.264 kb on - strand, within neiat 918.271 kb on + strand, within neiat 918.272 kb on - strand, within neiat 918.272 kb on - strand, within neiat 918.293 kb on - strand, within neiat 918.293 kb on - strand, within neiat 918.304 kb on - strand, within neiat 918.484 kb on - strandat 918.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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915,718 + NIAGMN_05035 0.29 -0.2
915,719 - NIAGMN_05035 0.29 -0.7
915,734 - NIAGMN_05035 0.30 +0.1
915,786 + NIAGMN_05035 0.35 -1.0
915,799 - NIAGMN_05035 0.36 +0.4
915,799 - NIAGMN_05035 0.36 -0.1
915,840 + NIAGMN_05035 0.40 -1.1
915,868 - NIAGMN_05035 0.43 -0.3
916,231 + NIAGMN_05035 0.77 -0.3
916,322 - NIAGMN_05035 0.85 -1.7
916,337 - NIAGMN_05035 0.87 -0.8
916,345 + NIAGMN_05035 0.88 -0.3
916,345 + NIAGMN_05035 0.88 -0.9
916,375 + -0.4
916,387 + -0.5
916,443 + +0.4
916,609 - -0.9
916,651 - -0.2
916,651 - +0.2
916,651 - -0.2
916,675 + -0.2
916,862 - abrB NIAGMN_05040 0.23 -1.8
916,878 + abrB NIAGMN_05040 0.24 +1.1
916,883 - abrB NIAGMN_05040 0.25 +0.6
916,887 + abrB NIAGMN_05040 0.25 +0.5
916,939 + abrB NIAGMN_05040 0.30 -0.0
916,939 + abrB NIAGMN_05040 0.30 -0.4
916,939 + abrB NIAGMN_05040 0.30 +0.0
916,939 + abrB NIAGMN_05040 0.30 +0.5
916,940 - abrB NIAGMN_05040 0.30 -0.3
917,141 - abrB NIAGMN_05040 0.49 +0.3
917,167 + abrB NIAGMN_05040 0.52 +0.9
917,168 - abrB NIAGMN_05040 0.52 -0.1
917,183 - abrB NIAGMN_05040 0.53 -2.1
917,305 - abrB NIAGMN_05040 0.65 +0.2
917,330 + abrB NIAGMN_05040 0.67 +0.7
917,330 + abrB NIAGMN_05040 0.67 +0.4
917,330 + abrB NIAGMN_05040 0.67 -0.2
917,330 + abrB NIAGMN_05040 0.67 -0.4
917,330 + abrB NIAGMN_05040 0.67 +1.0
917,330 + abrB NIAGMN_05040 0.67 -0.1
917,330 + abrB NIAGMN_05040 0.67 +1.6
917,330 + abrB NIAGMN_05040 0.67 +0.9
917,330 + abrB NIAGMN_05040 0.67 -0.8
917,330 + abrB NIAGMN_05040 0.67 +0.9
917,330 + abrB NIAGMN_05040 0.67 +0.2
917,331 - abrB NIAGMN_05040 0.67 +1.2
917,331 - abrB NIAGMN_05040 0.67 -0.7
917,331 - abrB NIAGMN_05040 0.67 +0.5
917,331 - abrB NIAGMN_05040 0.67 +1.2
917,331 - abrB NIAGMN_05040 0.67 -0.4
917,489 - abrB NIAGMN_05040 0.83 -0.3
917,499 - abrB NIAGMN_05040 0.83 +0.4
917,649 - +0.1
917,649 - -0.4
917,803 - nei NIAGMN_05045 0.17 -1.4
917,951 + nei NIAGMN_05045 0.36 +0.4
918,029 - nei NIAGMN_05045 0.46 -0.1
918,092 - nei NIAGMN_05045 0.54 -0.2
918,092 - nei NIAGMN_05045 0.54 -0.4
918,092 - nei NIAGMN_05045 0.54 +0.1
918,147 + nei NIAGMN_05045 0.60 +1.1
918,147 + nei NIAGMN_05045 0.60 -1.1
918,148 - nei NIAGMN_05045 0.61 +0.7
918,194 - nei NIAGMN_05045 0.66 -1.5
918,194 - nei NIAGMN_05045 0.66 -0.2
918,245 + nei NIAGMN_05045 0.73 +1.6
918,264 - nei NIAGMN_05045 0.75 +0.3
918,271 + nei NIAGMN_05045 0.76 -0.6
918,272 - nei NIAGMN_05045 0.76 +0.0
918,272 - nei NIAGMN_05045 0.76 -1.5
918,293 - nei NIAGMN_05045 0.79 +0.1
918,293 - nei NIAGMN_05045 0.79 +0.4
918,304 - nei NIAGMN_05045 0.80 +0.1
918,484 - +0.4
918,538 - -0.1

Or see this region's nucleotide sequence