Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04805

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzitB and pnuC overlap by 4 nucleotidespnuC and nadA are separated by 37 nucleotides NIAGMN_04800: zitB - CDF family zinc transporter ZitB, at 872,353 to 873,294 zitB NIAGMN_04805: pnuC - nicotinamide riboside transporter PnuC, at 873,291 to 874,010 pnuC NIAGMN_04810: nadA - quinolinate synthase NadA, at 874,048 to 875,091 nadA Position (kb) 873 874 875Strain fitness (log2 ratio) -3 -2 -1 0 1at 872.308 kb on - strandat 872.308 kb on - strandat 872.334 kb on - strandat 872.398 kb on - strandat 872.401 kb on - strandat 872.656 kb on - strand, within zitBat 872.880 kb on + strand, within zitBat 872.881 kb on - strand, within zitBat 872.987 kb on + strand, within zitBat 872.987 kb on + strand, within zitBat 872.987 kb on + strand, within zitBat 873.036 kb on + strand, within zitBat 873.083 kb on + strand, within zitBat 873.083 kb on + strand, within zitBat 873.083 kb on + strand, within zitBat 873.190 kb on + strand, within zitBat 873.223 kb on + strandat 873.223 kb on + strandat 873.380 kb on - strand, within pnuCat 873.428 kb on + strand, within pnuCat 873.441 kb on - strand, within pnuCat 873.473 kb on + strand, within pnuCat 873.474 kb on - strand, within pnuCat 873.504 kb on + strand, within pnuCat 873.504 kb on + strand, within pnuCat 873.504 kb on + strand, within pnuCat 873.550 kb on - strand, within pnuCat 873.793 kb on - strand, within pnuCat 873.808 kb on + strand, within pnuCat 873.972 kb on + strandat 873.973 kb on - strandat 873.973 kb on - strandat 873.974 kb on + strandat 873.975 kb on - strandat 873.975 kb on - strandat 873.975 kb on - strandat 873.975 kb on - strandat 873.975 kb on - strandat 873.979 kb on - strandat 873.979 kb on - strandat 874.043 kb on - strandat 874.058 kb on - strandat 874.081 kb on - strandat 874.156 kb on + strand, within nadAat 874.157 kb on - strand, within nadAat 874.396 kb on - strand, within nadAat 874.510 kb on + strand, within nadAat 874.841 kb on - strand, within nadAat 874.899 kb on + strand, within nadA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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872,308 - +0.0
872,308 - -1.5
872,334 - +0.2
872,398 - +0.3
872,401 - -0.1
872,656 - zitB NIAGMN_04800 0.32 -1.4
872,880 + zitB NIAGMN_04800 0.56 -0.3
872,881 - zitB NIAGMN_04800 0.56 +0.6
872,987 + zitB NIAGMN_04800 0.67 -1.3
872,987 + zitB NIAGMN_04800 0.67 -0.7
872,987 + zitB NIAGMN_04800 0.67 -0.6
873,036 + zitB NIAGMN_04800 0.73 -1.1
873,083 + zitB NIAGMN_04800 0.77 -0.2
873,083 + zitB NIAGMN_04800 0.77 +1.1
873,083 + zitB NIAGMN_04800 0.77 -1.4
873,190 + zitB NIAGMN_04800 0.89 +0.5
873,223 + +0.9
873,223 + -1.4
873,380 - pnuC NIAGMN_04805 0.12 +0.1
873,428 + pnuC NIAGMN_04805 0.19 +1.0
873,441 - pnuC NIAGMN_04805 0.21 +0.4
873,473 + pnuC NIAGMN_04805 0.25 -3.2
873,474 - pnuC NIAGMN_04805 0.25 -0.2
873,504 + pnuC NIAGMN_04805 0.30 +0.8
873,504 + pnuC NIAGMN_04805 0.30 +0.1
873,504 + pnuC NIAGMN_04805 0.30 +0.2
873,550 - pnuC NIAGMN_04805 0.36 +0.2
873,793 - pnuC NIAGMN_04805 0.70 -1.7
873,808 + pnuC NIAGMN_04805 0.72 +0.6
873,972 + +0.1
873,973 - +0.3
873,973 - +0.5
873,974 + -0.5
873,975 - -1.7
873,975 - +1.6
873,975 - -0.5
873,975 - +1.0
873,975 - +1.1
873,979 - -0.2
873,979 - +1.5
874,043 - -2.1
874,058 - +0.4
874,081 - -2.5
874,156 + nadA NIAGMN_04810 0.10 -0.9
874,157 - nadA NIAGMN_04810 0.10 -0.2
874,396 - nadA NIAGMN_04810 0.33 -0.6
874,510 + nadA NIAGMN_04810 0.44 -2.3
874,841 - nadA NIAGMN_04810 0.76 -0.9
874,899 + nadA NIAGMN_04810 0.82 +0.3

Or see this region's nucleotide sequence