Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03720

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntureC and ureB overlap by 8 nucleotidesureB and ureA are separated by 8 nucleotidesureA and ureD1 are separated by 90 nucleotides NIAGMN_03710: ureC - urease subunit alpha, at 660,931 to 662,634 ureC NIAGMN_03720: ureB - urease subunit beta, at 662,627 to 662,947 ureB NIAGMN_03725: ureA - urease subunit gamma, at 662,956 to 663,258 ureA NIAGMN_03730: ureD1 - Putative urease accessory UreD-like protein, at 663,349 to 664,047 ureD1 Position (kb) 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 661.723 kb on - strand, within ureCat 661.724 kb on + strand, within ureCat 661.818 kb on + strand, within ureCat 661.827 kb on + strand, within ureCat 661.861 kb on - strand, within ureCat 661.891 kb on - strand, within ureCat 662.109 kb on - strand, within ureCat 662.109 kb on - strand, within ureCat 662.109 kb on - strand, within ureCat 662.140 kb on - strand, within ureCat 662.324 kb on - strand, within ureCat 662.324 kb on - strand, within ureCat 662.324 kb on - strand, within ureCat 662.524 kb on - strandat 662.528 kb on - strandat 662.609 kb on + strandat 662.610 kb on - strandat 662.629 kb on - strandat 662.629 kb on - strandat 662.658 kb on - strandat 662.658 kb on - strandat 662.658 kb on - strandat 662.659 kb on + strand, within ureBat 662.659 kb on + strand, within ureBat 662.660 kb on - strand, within ureBat 662.660 kb on - strand, within ureBat 662.876 kb on - strand, within ureBat 662.878 kb on + strand, within ureBat 662.879 kb on - strand, within ureBat 662.879 kb on - strand, within ureBat 662.879 kb on - strand, within ureBat 662.888 kb on - strand, within ureBat 662.910 kb on - strand, within ureBat 662.910 kb on - strand, within ureBat 662.912 kb on - strand, within ureBat 662.913 kb on + strand, within ureBat 662.914 kb on - strand, within ureBat 662.914 kb on - strand, within ureBat 662.923 kb on + strandat 662.932 kb on - strandat 662.971 kb on - strandat 663.168 kb on + strand, within ureAat 663.169 kb on - strand, within ureAat 663.169 kb on - strand, within ureAat 663.227 kb on - strand, within ureAat 663.337 kb on - strandat 663.367 kb on - strandat 663.367 kb on - strandat 663.526 kb on - strand, within ureD1at 663.673 kb on - strand, within ureD1at 663.766 kb on - strand, within ureD1at 663.872 kb on - strand, within ureD1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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661,723 - ureC NIAGMN_03710 0.46 +0.7
661,724 + ureC NIAGMN_03710 0.47 +1.1
661,818 + ureC NIAGMN_03710 0.52 +0.5
661,827 + ureC NIAGMN_03710 0.53 -0.2
661,861 - ureC NIAGMN_03710 0.55 +1.2
661,891 - ureC NIAGMN_03710 0.56 +0.2
662,109 - ureC NIAGMN_03710 0.69 -1.4
662,109 - ureC NIAGMN_03710 0.69 -0.1
662,109 - ureC NIAGMN_03710 0.69 +0.8
662,140 - ureC NIAGMN_03710 0.71 -1.1
662,324 - ureC NIAGMN_03710 0.82 -1.5
662,324 - ureC NIAGMN_03710 0.82 -0.1
662,324 - ureC NIAGMN_03710 0.82 -2.8
662,524 - -0.6
662,528 - -0.7
662,609 + -1.4
662,610 - -0.9
662,629 - +0.9
662,629 - -2.2
662,658 - +0.1
662,658 - +1.8
662,658 - -0.5
662,659 + ureB NIAGMN_03720 0.10 -1.5
662,659 + ureB NIAGMN_03720 0.10 +0.6
662,660 - ureB NIAGMN_03720 0.10 +1.2
662,660 - ureB NIAGMN_03720 0.10 -0.2
662,876 - ureB NIAGMN_03720 0.78 +0.4
662,878 + ureB NIAGMN_03720 0.78 +0.9
662,879 - ureB NIAGMN_03720 0.79 -1.1
662,879 - ureB NIAGMN_03720 0.79 -0.3
662,879 - ureB NIAGMN_03720 0.79 +1.1
662,888 - ureB NIAGMN_03720 0.81 +0.3
662,910 - ureB NIAGMN_03720 0.88 +0.2
662,910 - ureB NIAGMN_03720 0.88 -0.2
662,912 - ureB NIAGMN_03720 0.89 -0.3
662,913 + ureB NIAGMN_03720 0.89 -1.5
662,914 - ureB NIAGMN_03720 0.89 +0.4
662,914 - ureB NIAGMN_03720 0.89 -1.2
662,923 + -0.3
662,932 - -0.7
662,971 - +0.8
663,168 + ureA NIAGMN_03725 0.70 +0.2
663,169 - ureA NIAGMN_03725 0.70 -1.0
663,169 - ureA NIAGMN_03725 0.70 -1.0
663,227 - ureA NIAGMN_03725 0.89 +0.8
663,337 - -0.5
663,367 - +1.1
663,367 - -0.3
663,526 - ureD1 NIAGMN_03730 0.25 +1.4
663,673 - ureD1 NIAGMN_03730 0.46 +0.5
663,766 - ureD1 NIAGMN_03730 0.60 +0.4
663,872 - ureD1 NIAGMN_03730 0.75 +0.4

Or see this region's nucleotide sequence