Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03235

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpflB and pflA are separated by 191 nucleotidespflA and ycaM are separated by 209 nucleotides NIAGMN_03230: pflB - formate C-acetyltransferase, at 571,595 to 573,877 pflB NIAGMN_03235: pflA - pyruvate formate lyase 1-activating protein, at 574,069 to 574,809 pflA NIAGMN_03240: ycaM - Inner membrane transporter YcaM, at 575,019 to 576,449 ycaM Position (kb) 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1at 573.092 kb on + strand, within pflBat 573.092 kb on + strand, within pflBat 573.092 kb on + strand, within pflBat 573.339 kb on + strand, within pflBat 573.431 kb on + strand, within pflBat 573.531 kb on + strand, within pflBat 573.640 kb on + strand, within pflBat 573.671 kb on + strandat 573.792 kb on + strandat 573.850 kb on + strandat 573.850 kb on + strandat 573.856 kb on + strandat 573.871 kb on + strandat 573.871 kb on + strandat 573.871 kb on + strandat 573.871 kb on + strandat 573.871 kb on + strandat 573.902 kb on + strandat 573.902 kb on + strandat 573.974 kb on + strandat 574.799 kb on + strandat 574.799 kb on + strandat 574.799 kb on + strandat 574.799 kb on + strandat 574.799 kb on + strandat 574.807 kb on + strandat 574.808 kb on - strandat 574.918 kb on - strandat 574.936 kb on - strandat 574.938 kb on - strandat 575.017 kb on - strandat 575.021 kb on - strandat 575.455 kb on - strand, within ycaMat 575.582 kb on + strand, within ycaM

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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573,092 + pflB NIAGMN_03230 0.66 -0.5
573,092 + pflB NIAGMN_03230 0.66 -0.2
573,092 + pflB NIAGMN_03230 0.66 -0.1
573,339 + pflB NIAGMN_03230 0.76 -0.1
573,431 + pflB NIAGMN_03230 0.80 -0.6
573,531 + pflB NIAGMN_03230 0.85 -2.0
573,640 + pflB NIAGMN_03230 0.90 -0.1
573,671 + +0.1
573,792 + -0.0
573,850 + -0.3
573,850 + +1.3
573,856 + +1.0
573,871 + -0.9
573,871 + +0.1
573,871 + +1.0
573,871 + +1.3
573,871 + -1.8
573,902 + -0.5
573,902 + -3.1
573,974 + -0.3
574,799 + -2.5
574,799 + +0.0
574,799 + -0.2
574,799 + +1.6
574,799 + -0.6
574,807 + +0.6
574,808 - +0.1
574,918 - +0.0
574,936 - -0.5
574,938 - +0.2
575,017 - -1.2
575,021 - -3.2
575,455 - ycaM NIAGMN_03240 0.30 +0.0
575,582 + ycaM NIAGMN_03240 0.39 -1.1

Or see this region's nucleotide sequence