Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01300

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjG and rbsK are separated by 9 nucleotidesrbsK and ydjI are separated by 4 nucleotidesydjI and ydjJ are separated by 20 nucleotides NIAGMN_01295: ydjG - NADH-dependent methylglyoxal reductase, at 232,190 to 233,170 ydjG NIAGMN_01300: rbsK - sugar kinase, at 233,180 to 234,112 rbsK NIAGMN_01305: ydjI - Uncharacterized protein YdjI, at 234,117 to 234,953 ydjI NIAGMN_01310: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 234,974 to 236,017 ydjJ Position (kb) 233 234 235Strain fitness (log2 ratio) -1 0 1at 232.317 kb on - strand, within ydjGat 232.406 kb on - strand, within ydjGat 232.774 kb on - strand, within ydjGat 232.993 kb on + strand, within ydjGat 232.994 kb on - strand, within ydjGat 233.252 kb on + strandat 233.253 kb on - strandat 233.316 kb on - strand, within rbsKat 233.316 kb on - strand, within rbsKat 233.567 kb on - strand, within rbsKat 233.834 kb on + strand, within rbsKat 234.499 kb on + strand, within ydjI

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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232,317 - ydjG NIAGMN_01295 0.13 +0.2
232,406 - ydjG NIAGMN_01295 0.22 +0.1
232,774 - ydjG NIAGMN_01295 0.60 -1.1
232,993 + ydjG NIAGMN_01295 0.82 -0.2
232,994 - ydjG NIAGMN_01295 0.82 +0.5
233,252 + +0.7
233,253 - -0.1
233,316 - rbsK NIAGMN_01300 0.15 +0.7
233,316 - rbsK NIAGMN_01300 0.15 -0.1
233,567 - rbsK NIAGMN_01300 0.41 +0.4
233,834 + rbsK NIAGMN_01300 0.70 +0.3
234,499 + ydjI NIAGMN_01305 0.46 -1.7

Or see this region's nucleotide sequence