Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01150

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntastB and astD overlap by 4 nucleotidesastD and astA overlap by 4 nucleotides NIAGMN_01145: astB - N-succinylarginine dihydrolase, at 202,000 to 203,343 astB NIAGMN_01150: astD - succinylglutamate-semialdehyde dehydrogenase, at 203,340 to 204,818 astD NIAGMN_01155: astA - arginine N-succinyltransferase, at 204,815 to 205,849 astA Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.436 kb on + strand, within astBat 202.436 kb on + strand, within astBat 202.440 kb on + strand, within astBat 202.440 kb on + strand, within astBat 202.867 kb on - strand, within astBat 203.538 kb on - strand, within astDat 203.628 kb on - strand, within astDat 203.867 kb on + strand, within astDat 203.971 kb on - strand, within astDat 204.333 kb on - strand, within astDat 204.357 kb on - strand, within astDat 204.387 kb on - strand, within astDat 204.387 kb on - strand, within astDat 204.492 kb on - strand, within astDat 204.932 kb on - strand, within astAat 205.040 kb on - strand, within astAat 205.105 kb on - strand, within astAat 205.167 kb on - strand, within astAat 205.167 kb on - strand, within astAat 205.167 kb on - strand, within astAat 205.200 kb on - strand, within astAat 205.213 kb on - strand, within astAat 205.415 kb on - strand, within astAat 205.585 kb on - strand, within astAat 205.591 kb on - strand, within astA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
202,436 + astB NIAGMN_01145 0.32 -2.3
202,436 + astB NIAGMN_01145 0.32 +0.7
202,440 + astB NIAGMN_01145 0.33 +0.1
202,440 + astB NIAGMN_01145 0.33 +0.9
202,867 - astB NIAGMN_01145 0.65 +0.6
203,538 - astD NIAGMN_01150 0.13 -0.0
203,628 - astD NIAGMN_01150 0.19 +0.0
203,867 + astD NIAGMN_01150 0.36 +0.6
203,971 - astD NIAGMN_01150 0.43 +0.4
204,333 - astD NIAGMN_01150 0.67 +0.1
204,357 - astD NIAGMN_01150 0.69 +0.2
204,387 - astD NIAGMN_01150 0.71 -0.9
204,387 - astD NIAGMN_01150 0.71 +0.6
204,492 - astD NIAGMN_01150 0.78 +1.5
204,932 - astA NIAGMN_01155 0.11 +1.4
205,040 - astA NIAGMN_01155 0.22 +0.4
205,105 - astA NIAGMN_01155 0.28 +0.1
205,167 - astA NIAGMN_01155 0.34 +0.0
205,167 - astA NIAGMN_01155 0.34 -0.3
205,167 - astA NIAGMN_01155 0.34 -0.1
205,200 - astA NIAGMN_01155 0.37 +0.6
205,213 - astA NIAGMN_01155 0.38 +0.6
205,415 - astA NIAGMN_01155 0.58 -1.5
205,585 - astA NIAGMN_01155 0.74 -0.8
205,591 - astA NIAGMN_01155 0.75 -0.4

Or see this region's nucleotide sequence