Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00925

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntppsA and ppsR are separated by 332 nucleotidesppsR and aroH are separated by 156 nucleotides NIAGMN_00920: ppsA - phosphoenolpyruvate synthase, at 160,019 to 162,397 ppsA NIAGMN_00925: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 162,730 to 163,563 ppsR NIAGMN_00930: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 163,720 to 164,766 aroH Position (kb) 162 163 164Strain fitness (log2 ratio) -1 0 1 2at 161.909 kb on + strand, within ppsAat 161.909 kb on + strand, within ppsAat 161.910 kb on - strand, within ppsAat 161.996 kb on - strand, within ppsAat 161.996 kb on - strand, within ppsAat 162.335 kb on + strandat 162.359 kb on - strandat 163.788 kb on - strandat 164.338 kb on - strand, within aroHat 164.409 kb on + strand, within aroH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
161,909 + ppsA NIAGMN_00920 0.79 +0.2
161,909 + ppsA NIAGMN_00920 0.79 +0.1
161,910 - ppsA NIAGMN_00920 0.79 +0.0
161,996 - ppsA NIAGMN_00920 0.83 +0.3
161,996 - ppsA NIAGMN_00920 0.83 +1.8
162,335 + +0.6
162,359 - +1.8
163,788 - -0.9
164,338 - aroH NIAGMN_00930 0.59 +0.3
164,409 + aroH NIAGMN_00930 0.66 +0.5

Or see this region's nucleotide sequence