Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00840

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiJ and ydiK are separated by 388 nucleotidesydiK and ydiL are separated by 428 nucleotidesydiL and ydiM are separated by 99 nucleotides NIAGMN_00835: ydiJ - Uncharacterized protein YdiJ, at 140,912 to 143,968 ydiJ NIAGMN_00840: ydiK - AI-2E family transporter YdiK, at 144,357 to 145,469 ydiK NIAGMN_00850: ydiL - Uncharacterized protein YdiL, at 145,898 to 146,254 ydiL NIAGMN_00855: ydiM - Inner membrane transport protein YdiM, at 146,354 to 147,568 ydiM Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1at 143.438 kb on + strand, within ydiJat 143.439 kb on - strand, within ydiJat 143.629 kb on + strand, within ydiJat 143.663 kb on - strandat 143.826 kb on + strandat 143.969 kb on + strandat 143.970 kb on - strandat 143.971 kb on + strandat 144.059 kb on + strandat 144.122 kb on + strandat 144.122 kb on + strandat 144.356 kb on + strandat 144.577 kb on + strand, within ydiKat 144.590 kb on + strand, within ydiKat 144.789 kb on + strand, within ydiKat 144.790 kb on - strand, within ydiKat 144.846 kb on - strand, within ydiKat 146.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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143,438 + ydiJ NIAGMN_00835 0.83 +0.1
143,439 - ydiJ NIAGMN_00835 0.83 -1.5
143,629 + ydiJ NIAGMN_00835 0.89 +0.0
143,663 - -0.4
143,826 + -0.6
143,969 + -0.4
143,970 - +0.0
143,971 + -0.5
144,059 + -0.7
144,122 + -0.5
144,122 + +0.0
144,356 + +0.0
144,577 + ydiK NIAGMN_00840 0.20 -0.9
144,590 + ydiK NIAGMN_00840 0.21 +0.0
144,789 + ydiK NIAGMN_00840 0.39 +0.0
144,790 - ydiK NIAGMN_00840 0.39 -2.1
144,846 - ydiK NIAGMN_00840 0.44 +0.4
146,347 - -0.1

Or see this region's nucleotide sequence