Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00690

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpunR and punC are separated by 112 nucleotidespunC and cfa are separated by 290 nucleotides NIAGMN_00685: punR - DNA-binding transcriptional activator PunR, at 114,148 to 115,080 punR NIAGMN_00690: punC - purine nucleoside transporter PunC, at 115,193 to 116,404 punC NIAGMN_00695: cfa - cyclopropane fatty acyl phospholipid synthase, at 116,695 to 117,843 cfa Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.196 kb on - strandat 114.333 kb on + strand, within punRat 114.377 kb on - strand, within punRat 114.457 kb on - strand, within punRat 114.462 kb on + strand, within punRat 114.463 kb on - strand, within punRat 114.467 kb on - strand, within punRat 114.584 kb on - strand, within punRat 114.976 kb on - strand, within punRat 115.118 kb on - strandat 115.136 kb on + strandat 115.189 kb on - strandat 115.190 kb on + strandat 115.190 kb on + strandat 115.266 kb on - strandat 115.333 kb on + strand, within punCat 115.334 kb on - strand, within punCat 115.759 kb on + strand, within punCat 115.826 kb on + strand, within punCat 116.327 kb on + strandat 116.415 kb on + strandat 116.417 kb on + strandat 116.417 kb on + strandat 116.490 kb on + strandat 116.505 kb on + strandat 116.601 kb on - strandat 116.712 kb on - strandat 116.880 kb on + strand, within cfaat 116.880 kb on + strand, within cfaat 116.881 kb on - strand, within cfaat 116.913 kb on + strand, within cfaat 117.104 kb on - strand, within cfaat 117.244 kb on + strand, within cfaat 117.245 kb on - strand, within cfaat 117.245 kb on - strand, within cfaat 117.255 kb on + strand, within cfaat 117.256 kb on - strand, within cfa

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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114,196 - -0.8
114,333 + punR NIAGMN_00685 0.20 +0.7
114,377 - punR NIAGMN_00685 0.25 -0.4
114,457 - punR NIAGMN_00685 0.33 -0.6
114,462 + punR NIAGMN_00685 0.34 -1.0
114,463 - punR NIAGMN_00685 0.34 -1.2
114,467 - punR NIAGMN_00685 0.34 -0.3
114,584 - punR NIAGMN_00685 0.47 -1.6
114,976 - punR NIAGMN_00685 0.89 -0.4
115,118 - +0.5
115,136 + -0.3
115,189 - -1.2
115,190 + +0.5
115,190 + +0.1
115,266 - -3.6
115,333 + punC NIAGMN_00690 0.12 -0.1
115,334 - punC NIAGMN_00690 0.12 +0.2
115,759 + punC NIAGMN_00690 0.47 +0.9
115,826 + punC NIAGMN_00690 0.52 +0.7
116,327 + +1.6
116,415 + -0.8
116,417 + +2.2
116,417 + -1.4
116,490 + +0.5
116,505 + +1.0
116,601 - -0.9
116,712 - +1.2
116,880 + cfa NIAGMN_00695 0.16 +0.7
116,880 + cfa NIAGMN_00695 0.16 -1.2
116,881 - cfa NIAGMN_00695 0.16 -2.3
116,913 + cfa NIAGMN_00695 0.19 +0.2
117,104 - cfa NIAGMN_00695 0.36 -0.3
117,244 + cfa NIAGMN_00695 0.48 -0.4
117,245 - cfa NIAGMN_00695 0.48 -0.2
117,245 - cfa NIAGMN_00695 0.48 -0.7
117,255 + cfa NIAGMN_00695 0.49 -0.7
117,256 - cfa NIAGMN_00695 0.49 -1.0

Or see this region's nucleotide sequence