Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00610

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydhK and sodC are separated by 0 nucleotidessodC and ydhF are separated by 188 nucleotides NIAGMN_00605: ydhK - Uncharacterized transporter YdhK, at 97,418 to 99,430 ydhK NIAGMN_00610: sodC - superoxide dismutase [Cu-Zn] SodC, at 99,431 to 99,952 sodC NIAGMN_00615: ydhF - Oxidoreductase YdhF, at 100,141 to 100,929 ydhF Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1at 98.494 kb on + strand, within ydhKat 98.635 kb on + strand, within ydhKat 99.121 kb on - strand, within ydhKat 99.134 kb on - strand, within ydhKat 99.136 kb on - strand, within ydhKat 99.223 kb on + strand, within ydhKat 99.297 kb on + strandat 99.436 kb on + strandat 99.436 kb on + strandat 99.441 kb on - strandat 99.596 kb on - strand, within sodCat 99.661 kb on + strand, within sodCat 99.989 kb on - strandat 99.989 kb on - strandat 100.062 kb on + strandat 100.373 kb on - strand, within ydhFat 100.552 kb on + strand, within ydhFat 100.609 kb on - strand, within ydhFat 100.683 kb on + strand, within ydhFat 100.911 kb on + strandat 100.912 kb on - strandat 100.951 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
98,494 + ydhK NIAGMN_00605 0.53 +0.4
98,635 + ydhK NIAGMN_00605 0.60 -0.8
99,121 - ydhK NIAGMN_00605 0.85 -0.2
99,134 - ydhK NIAGMN_00605 0.85 +0.6
99,136 - ydhK NIAGMN_00605 0.85 +1.1
99,223 + ydhK NIAGMN_00605 0.90 -0.2
99,297 + +0.6
99,436 + +0.7
99,436 + +0.5
99,441 - -2.0
99,596 - sodC NIAGMN_00610 0.32 +0.7
99,661 + sodC NIAGMN_00610 0.44 +0.0
99,989 - -1.4
99,989 - -0.3
100,062 + +0.5
100,373 - ydhF NIAGMN_00615 0.29 +1.6
100,552 + ydhF NIAGMN_00615 0.52 +0.4
100,609 - ydhF NIAGMN_00615 0.59 -0.8
100,683 + ydhF NIAGMN_00615 0.69 +0.6
100,911 + -0.1
100,912 - -1.4
100,951 - -0.2

Or see this region's nucleotide sequence