Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgT and ydgK are separated by 85 nucleotides ydgK and rsxA are separated by 76 nucleotides rsxA and rsxB overlap by 1 nucleotides rsxB and rsxC overlap by 8 nucleotides
NIAGMN_00500: ydgT - transcription modulator YdgT, at 80,151 to 80,366
ydgT
NIAGMN_00505: ydgK - Inner membrane protein YdgK, at 80,452 to 80,892
ydgK
NIAGMN_00510: rsxA - electron transport complex subunit RsxA, at 80,969 to 81,550
rsxA
NIAGMN_00515: rsxB - electron transport complex subunit RsxB, at 81,550 to 82,128
rsxB
NIAGMN_00520: rsxC - electron transport complex subunit RsxC, at 82,121 to 84,439
rsxC
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.056 kb on + strand at 80.110 kb on - strand at 80.166 kb on + strand at 80.228 kb on + strand, within ydgT at 80.264 kb on + strand, within ydgT at 80.397 kb on + strand at 80.400 kb on + strand at 80.451 kb on + strand at 80.451 kb on + strand at 80.719 kb on + strand, within ydgK at 80.721 kb on + strand, within ydgK at 80.814 kb on + strand, within ydgK at 80.953 kb on + strand at 80.978 kb on + strand at 80.978 kb on + strand at 81.128 kb on - strand, within rsxA at 81.169 kb on + strand, within rsxA at 81.200 kb on - strand, within rsxA at 81.200 kb on - strand, within rsxA at 81.295 kb on + strand, within rsxA at 81.337 kb on + strand, within rsxA at 81.475 kb on + strand, within rsxA at 81.490 kb on - strand, within rsxA at 81.505 kb on + strand at 81.505 kb on + strand at 81.505 kb on + strand at 81.520 kb on + strand at 81.548 kb on + strand at 81.558 kb on + strand at 81.969 kb on + strand, within rsxB at 81.969 kb on + strand, within rsxB at 82.126 kb on + strand at 82.126 kb on + strand at 82.213 kb on + strand at 82.297 kb on + strand at 82.437 kb on + strand, within rsxC at 82.524 kb on + strand, within rsxC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 80,056 + +0.3 80,110 - +0.2 80,166 + -0.3 80,228 + ydgT NIAGMN_00500 0.36 +0.7 80,264 + ydgT NIAGMN_00500 0.52 +0.2 80,397 + -0.1 80,400 + +0.7 80,451 + +0.2 80,451 + +0.7 80,719 + ydgK NIAGMN_00505 0.61 +1.0 80,721 + ydgK NIAGMN_00505 0.61 +1.7 80,814 + ydgK NIAGMN_00505 0.82 +0.8 80,953 + -0.2 80,978 + -0.5 80,978 + +0.8 81,128 - rsxA NIAGMN_00510 0.27 +0.0 81,169 + rsxA NIAGMN_00510 0.34 -1.2 81,200 - rsxA NIAGMN_00510 0.40 +0.1 81,200 - rsxA NIAGMN_00510 0.40 +2.4 81,295 + rsxA NIAGMN_00510 0.56 -0.0 81,337 + rsxA NIAGMN_00510 0.63 +0.3 81,475 + rsxA NIAGMN_00510 0.87 +1.0 81,490 - rsxA NIAGMN_00510 0.90 -1.5 81,505 + +0.3 81,505 + -1.2 81,505 + -2.0 81,520 + +0.6 81,548 + -1.8 81,558 + -0.4 81,969 + rsxB NIAGMN_00515 0.72 -2.2 81,969 + rsxB NIAGMN_00515 0.72 +0.0 82,126 + -0.1 82,126 + -1.1 82,213 + -1.5 82,297 + +0.5 82,437 + rsxC NIAGMN_00520 0.14 -1.5 82,524 + rsxC NIAGMN_00520 0.17 +0.5
Or see this region's nucleotide sequence