Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00190

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_00180 and NIAGMN_00185 are separated by 15 nucleotidesNIAGMN_00185 and dnaC are separated by 126 nucleotidesdnaC and NIAGMN_00195 are separated by 6 nucleotidesNIAGMN_00195 and NIAGMN_00200 are separated by 22 nucleotides NIAGMN_00180: NIAGMN_00180 - DUF977 domain-containing protein, at 23,040 to 23,435 _00180 NIAGMN_00185: NIAGMN_00185 - DUF1627 domain-containing protein, at 23,451 to 24,119 _00185 NIAGMN_00190: dnaC - DNA replication protein DnaC, at 24,246 to 24,986 dnaC NIAGMN_00195: NIAGMN_00195 - DNA-binding protein, at 24,993 to 25,955 _00195 NIAGMN_00200: NIAGMN_00200 - Rha family transcriptional regulator, at 25,978 to 26,403 _00200 Position (kb) 24 25Strain fitness (log2 ratio) -1 0 1at 23.790 kb on + strand, within NIAGMN_00185at 23.823 kb on - strand, within NIAGMN_00185at 24.128 kb on - strandat 24.252 kb on - strandat 24.324 kb on - strand, within dnaCat 24.396 kb on - strand, within dnaCat 24.663 kb on - strand, within dnaCat 25.292 kb on - strand, within NIAGMN_00195at 25.641 kb on - strand, within NIAGMN_00195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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23,790 + NIAGMN_00185 0.51 -0.9
23,823 - NIAGMN_00185 0.56 -0.7
24,128 - -0.4
24,252 - +0.2
24,324 - dnaC NIAGMN_00190 0.11 -0.7
24,396 - dnaC NIAGMN_00190 0.20 +0.3
24,663 - dnaC NIAGMN_00190 0.56 +0.9
25,292 - NIAGMN_00195 0.31 -0.2
25,641 - NIAGMN_00195 0.67 -0.7

Or see this region's nucleotide sequence