Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeQ and ybeL are separated by 69 nucleotides ybeL and leuS are separated by 235 nucleotides leuS and lptE are separated by 14 nucleotides lptE and holA overlap by 1 nucleotides
MCAODC_26535: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,023,277 to 2,023,864
ybeQ
MCAODC_26540: ybeL - zinc ribbon-containing protein, at 2,023,934 to 2,024,416
ybeL
MCAODC_26545: leuS - leucine--tRNA ligase, at 2,024,652 to 2,027,234
leuS
MCAODC_26550: lptE - LPS assembly lipoprotein LptE, at 2,027,249 to 2,027,830
lptE
MCAODC_26555: holA - DNA polymerase III subunit delta, at 2,027,830 to 2,028,861
holA
Position (kb)
2024
2025
2026
2027
2028 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2023.688 kb on - strand, within ybeQ at 2023.724 kb on + strand, within ybeQ at 2023.724 kb on + strand, within ybeQ at 2023.726 kb on + strand, within ybeQ at 2023.727 kb on - strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.739 kb on - strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.743 kb on - strand, within ybeQ at 2023.743 kb on - strand, within ybeQ at 2023.793 kb on + strand, within ybeQ at 2023.857 kb on + strand at 2024.008 kb on - strand, within ybeL at 2024.076 kb on + strand, within ybeL at 2024.077 kb on - strand, within ybeL at 2024.220 kb on + strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.398 kb on - strand at 2024.398 kb on - strand at 2024.398 kb on - strand at 2024.445 kb on + strand at 2024.445 kb on + strand at 2024.446 kb on - strand at 2024.447 kb on + strand at 2024.448 kb on - strand at 2024.448 kb on - strand at 2024.450 kb on + strand at 2024.451 kb on - strand at 2024.451 kb on - strand at 2024.451 kb on - strand at 2024.453 kb on + strand at 2024.479 kb on + strand at 2024.479 kb on + strand at 2024.480 kb on - strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,023,688 - ybeQ MCAODC_26535 0.70 -2.8 2,023,724 + ybeQ MCAODC_26535 0.76 -0.5 2,023,724 + ybeQ MCAODC_26535 0.76 +0.5 2,023,726 + ybeQ MCAODC_26535 0.76 -0.8 2,023,727 - ybeQ MCAODC_26535 0.77 +0.5 2,023,738 + ybeQ MCAODC_26535 0.78 -1.2 2,023,738 + ybeQ MCAODC_26535 0.78 +0.8 2,023,738 + ybeQ MCAODC_26535 0.78 +1.4 2,023,738 + ybeQ MCAODC_26535 0.78 -0.0 2,023,739 - ybeQ MCAODC_26535 0.79 +0.7 2,023,742 + ybeQ MCAODC_26535 0.79 +0.7 2,023,742 + ybeQ MCAODC_26535 0.79 -0.0 2,023,742 + ybeQ MCAODC_26535 0.79 -0.8 2,023,742 + ybeQ MCAODC_26535 0.79 -0.8 2,023,743 - ybeQ MCAODC_26535 0.79 +0.3 2,023,743 - ybeQ MCAODC_26535 0.79 -0.6 2,023,793 + ybeQ MCAODC_26535 0.88 -0.3 2,023,857 + +0.8 2,024,008 - ybeL MCAODC_26540 0.15 +0.1 2,024,076 + ybeL MCAODC_26540 0.29 -0.7 2,024,077 - ybeL MCAODC_26540 0.30 -0.7 2,024,220 + ybeL MCAODC_26540 0.59 -0.5 2,024,221 - ybeL MCAODC_26540 0.59 -1.6 2,024,221 - ybeL MCAODC_26540 0.59 +0.1 2,024,221 - ybeL MCAODC_26540 0.59 -0.5 2,024,221 - ybeL MCAODC_26540 0.59 -0.8 2,024,398 - +0.1 2,024,398 - -0.3 2,024,398 - +0.3 2,024,445 + +1.0 2,024,445 + -0.4 2,024,446 - +0.8 2,024,447 + -0.2 2,024,448 - +0.7 2,024,448 - -0.6 2,024,450 + +1.0 2,024,451 - +0.1 2,024,451 - +0.7 2,024,451 - -0.5 2,024,453 + -0.8 2,024,479 + -0.3 2,024,479 + -0.2 2,024,480 - -1.6 2,024,504 + -0.0 2,024,504 + +0.4 2,024,504 + +0.9 2,024,504 + +0.1 2,024,504 + -2.7
Or see this region's nucleotide sequence