Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lnt and gltI are separated by 396 nucleotides gltI and gltJ are separated by 169 nucleotides gltJ and gltK overlap by 1 nucleotides
MCAODC_26460: lnt - apolipoprotein N-acyltransferase, at 2,009,751 to 2,011,289
lnt
MCAODC_26465: gltI - glutamate/aspartate ABC transporter substrate-binding protein GltI, at 2,011,686 to 2,012,594
gltI
MCAODC_26475: gltJ - glutamate/aspartate ABC transporter permease GltJ, at 2,012,764 to 2,013,504
gltJ
MCAODC_26480: gltK - glutamate/aspartate ABC transporter permease GltK, at 2,013,504 to 2,014,178
gltK
Position (kb)
2011
2012
2013 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2011.298 kb on + strand at 2011.299 kb on - strand at 2011.311 kb on + strand at 2011.321 kb on - strand at 2011.321 kb on - strand at 2011.371 kb on + strand at 2011.372 kb on - strand at 2011.398 kb on + strand at 2011.398 kb on + strand at 2011.398 kb on + strand at 2011.399 kb on - strand at 2011.412 kb on - strand at 2011.426 kb on + strand at 2011.672 kb on + strand at 2011.673 kb on - strand at 2011.693 kb on + strand at 2011.697 kb on + strand at 2011.697 kb on + strand at 2011.779 kb on - strand, within gltI at 2011.779 kb on - strand, within gltI at 2011.838 kb on - strand, within gltI at 2011.848 kb on + strand, within gltI at 2012.024 kb on + strand, within gltI at 2012.025 kb on - strand, within gltI at 2012.171 kb on + strand, within gltI at 2012.292 kb on - strand, within gltI at 2012.386 kb on - strand, within gltI at 2012.486 kb on + strand, within gltI at 2012.592 kb on + strand at 2012.593 kb on - strand at 2012.636 kb on + strand at 2012.636 kb on + strand at 2012.640 kb on + strand at 2012.654 kb on + strand at 2012.655 kb on - strand at 2012.656 kb on + strand at 2012.656 kb on + strand at 2012.656 kb on + strand at 2012.656 kb on + strand at 2012.656 kb on + strand at 2012.656 kb on + strand at 2012.657 kb on - strand at 2012.698 kb on - strand at 2012.757 kb on + strand at 2012.758 kb on - strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.763 kb on + strand at 2012.764 kb on - strand at 2012.764 kb on - strand at 2012.764 kb on - strand at 2012.769 kb on + strand at 2012.769 kb on + strand at 2012.769 kb on + strand at 2012.769 kb on + strand at 2012.770 kb on - strand at 2012.770 kb on - strand at 2012.771 kb on + strand at 2012.771 kb on + strand at 2012.771 kb on + strand at 2012.771 kb on + strand at 2012.772 kb on - strand at 2012.772 kb on - strand at 2012.824 kb on + strand at 2012.824 kb on + strand at 2012.824 kb on + strand at 2012.825 kb on - strand at 2012.825 kb on - strand at 2012.921 kb on + strand, within gltJ at 2012.922 kb on - strand, within gltJ at 2012.926 kb on - strand, within gltJ at 2012.926 kb on - strand, within gltJ at 2012.965 kb on + strand, within gltJ at 2012.965 kb on + strand, within gltJ at 2012.965 kb on + strand, within gltJ at 2012.966 kb on - strand, within gltJ at 2012.966 kb on - strand, within gltJ at 2012.966 kb on - strand, within gltJ at 2013.009 kb on + strand, within gltJ at 2013.009 kb on + strand, within gltJ at 2013.152 kb on + strand, within gltJ at 2013.153 kb on - strand, within gltJ at 2013.235 kb on + strand, within gltJ at 2013.239 kb on + strand, within gltJ at 2013.239 kb on + strand, within gltJ at 2013.249 kb on + strand, within gltJ at 2013.342 kb on + strand, within gltJ at 2013.342 kb on + strand, within gltJ at 2013.400 kb on - strand, within gltJ at 2013.408 kb on + strand, within gltJ at 2013.408 kb on + strand, within gltJ at 2013.409 kb on - strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.418 kb on + strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.419 kb on - strand, within gltJ at 2013.426 kb on + strand, within gltJ at 2013.427 kb on - strand, within gltJ at 2013.438 kb on + strand at 2013.439 kb on - strand at 2013.502 kb on + strand at 2013.502 kb on + strand at 2013.502 kb on + strand at 2013.547 kb on - strand at 2013.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,011,298 + -1.5 2,011,299 - -0.3 2,011,311 + -0.9 2,011,321 - +0.8 2,011,321 - -1.2 2,011,371 + +0.8 2,011,372 - +1.5 2,011,398 + +0.6 2,011,398 + +1.4 2,011,398 + +0.4 2,011,399 - +0.5 2,011,412 - -0.5 2,011,426 + +1.3 2,011,672 + -0.2 2,011,673 - -0.1 2,011,693 + -0.1 2,011,697 + -0.6 2,011,697 + +0.9 2,011,779 - gltI MCAODC_26465 0.10 -1.3 2,011,779 - gltI MCAODC_26465 0.10 -2.1 2,011,838 - gltI MCAODC_26465 0.17 -1.9 2,011,848 + gltI MCAODC_26465 0.18 -0.6 2,012,024 + gltI MCAODC_26465 0.37 -1.0 2,012,025 - gltI MCAODC_26465 0.37 -1.2 2,012,171 + gltI MCAODC_26465 0.53 -1.0 2,012,292 - gltI MCAODC_26465 0.67 +1.9 2,012,386 - gltI MCAODC_26465 0.77 +0.7 2,012,486 + gltI MCAODC_26465 0.88 +0.5 2,012,592 + +0.7 2,012,593 - -1.6 2,012,636 + -0.9 2,012,636 + -0.3 2,012,640 + +0.3 2,012,654 + +1.1 2,012,655 - -0.9 2,012,656 + +0.0 2,012,656 + +0.8 2,012,656 + -0.6 2,012,656 + -0.1 2,012,656 + -0.2 2,012,656 + +0.2 2,012,657 - +0.3 2,012,698 - +1.1 2,012,757 + +0.6 2,012,758 - -2.3 2,012,763 + -0.1 2,012,763 + +0.5 2,012,763 + -0.6 2,012,763 + -0.2 2,012,763 + +0.5 2,012,763 + +0.1 2,012,763 + +0.5 2,012,764 - -2.0 2,012,764 - +0.3 2,012,764 - -0.4 2,012,769 + -2.2 2,012,769 + +0.9 2,012,769 + -0.2 2,012,769 + +1.0 2,012,770 - -1.7 2,012,770 - -0.1 2,012,771 + -0.5 2,012,771 + -1.3 2,012,771 + +1.3 2,012,771 + +1.9 2,012,772 - -1.1 2,012,772 - -0.8 2,012,824 + -0.8 2,012,824 + -0.4 2,012,824 + +0.3 2,012,825 - -1.2 2,012,825 - +0.4 2,012,921 + gltJ MCAODC_26475 0.21 -0.2 2,012,922 - gltJ MCAODC_26475 0.21 +0.9 2,012,926 - gltJ MCAODC_26475 0.22 +2.0 2,012,926 - gltJ MCAODC_26475 0.22 +0.6 2,012,965 + gltJ MCAODC_26475 0.27 +0.9 2,012,965 + gltJ MCAODC_26475 0.27 +0.7 2,012,965 + gltJ MCAODC_26475 0.27 -2.7 2,012,966 - gltJ MCAODC_26475 0.27 -0.7 2,012,966 - gltJ MCAODC_26475 0.27 -0.1 2,012,966 - gltJ MCAODC_26475 0.27 +0.3 2,013,009 + gltJ MCAODC_26475 0.33 +1.5 2,013,009 + gltJ MCAODC_26475 0.33 +0.8 2,013,152 + gltJ MCAODC_26475 0.52 -0.6 2,013,153 - gltJ MCAODC_26475 0.52 -0.3 2,013,235 + gltJ MCAODC_26475 0.64 +0.2 2,013,239 + gltJ MCAODC_26475 0.64 +0.5 2,013,239 + gltJ MCAODC_26475 0.64 +1.1 2,013,249 + gltJ MCAODC_26475 0.65 -0.4 2,013,342 + gltJ MCAODC_26475 0.78 +0.6 2,013,342 + gltJ MCAODC_26475 0.78 +0.4 2,013,400 - gltJ MCAODC_26475 0.86 +0.0 2,013,408 + gltJ MCAODC_26475 0.87 -2.6 2,013,408 + gltJ MCAODC_26475 0.87 +0.2 2,013,409 - gltJ MCAODC_26475 0.87 +1.1 2,013,418 + gltJ MCAODC_26475 0.88 -0.3 2,013,418 + gltJ MCAODC_26475 0.88 -1.0 2,013,418 + gltJ MCAODC_26475 0.88 +0.7 2,013,418 + gltJ MCAODC_26475 0.88 +0.8 2,013,418 + gltJ MCAODC_26475 0.88 +0.0 2,013,418 + gltJ MCAODC_26475 0.88 +1.8 2,013,419 - gltJ MCAODC_26475 0.88 +2.1 2,013,419 - gltJ MCAODC_26475 0.88 +0.7 2,013,419 - gltJ MCAODC_26475 0.88 +0.2 2,013,419 - gltJ MCAODC_26475 0.88 +1.2 2,013,419 - gltJ MCAODC_26475 0.88 -0.4 2,013,419 - gltJ MCAODC_26475 0.88 -0.1 2,013,426 + gltJ MCAODC_26475 0.89 +0.0 2,013,427 - gltJ MCAODC_26475 0.89 +0.1 2,013,438 + +1.1 2,013,439 - -0.1 2,013,502 + -0.4 2,013,502 + +0.1 2,013,502 + -0.1 2,013,547 - -0.1 2,013,547 - +0.7
Or see this region's nucleotide sequence