Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjO and potI are separated by 59 nucleotides potI and potH overlap by 4 nucleotides potH and potG are separated by 9 nucleotides
MCAODC_25155: ybjO - Inner membrane protein YbjO, at 1,756,941 to 1,757,429
ybjO
MCAODC_25160: potI - putrescine ABC transporter permease PotI, at 1,757,489 to 1,758,334
potI
MCAODC_25165: potH - putrescine ABC transporter permease PotH, at 1,758,331 to 1,759,284
potH
MCAODC_25170: potG - putrescine ABC transporter ATP-binding subunit PotG, at 1,759,294 to 1,760,427
potG
Position (kb)
1758
1759
1760 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1757.333 kb on + strand, within ybjO at 1757.334 kb on - strand, within ybjO at 1757.402 kb on + strand at 1757.448 kb on + strand at 1757.448 kb on + strand at 1757.449 kb on - strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.458 kb on + strand at 1757.459 kb on - strand at 1757.459 kb on - strand at 1757.459 kb on - strand at 1757.459 kb on - strand at 1757.462 kb on + strand at 1757.463 kb on - strand at 1757.551 kb on - strand at 1757.551 kb on - strand at 1757.719 kb on + strand, within potI at 1757.719 kb on + strand, within potI at 1757.720 kb on - strand, within potI at 1757.770 kb on + strand, within potI at 1757.860 kb on + strand, within potI at 1757.874 kb on + strand, within potI at 1757.874 kb on + strand, within potI at 1757.874 kb on + strand, within potI at 1757.874 kb on + strand, within potI at 1757.875 kb on - strand, within potI at 1757.875 kb on - strand, within potI at 1757.875 kb on - strand, within potI at 1757.875 kb on - strand, within potI at 1757.917 kb on + strand, within potI at 1757.963 kb on + strand, within potI at 1757.964 kb on - strand, within potI at 1757.966 kb on + strand, within potI at 1758.003 kb on - strand, within potI at 1758.134 kb on + strand, within potI at 1758.318 kb on - strand at 1758.391 kb on + strand at 1758.464 kb on - strand, within potH at 1758.561 kb on + strand, within potH at 1758.562 kb on - strand, within potH at 1758.720 kb on + strand, within potH at 1758.722 kb on + strand, within potH at 1758.722 kb on + strand, within potH at 1758.723 kb on - strand, within potH at 1758.723 kb on - strand, within potH at 1758.723 kb on - strand, within potH at 1758.790 kb on - strand, within potH at 1758.814 kb on + strand, within potH at 1758.877 kb on + strand, within potH at 1758.878 kb on - strand, within potH at 1758.881 kb on - strand, within potH at 1758.885 kb on + strand, within potH at 1758.885 kb on + strand, within potH at 1758.886 kb on - strand, within potH at 1758.989 kb on + strand, within potH at 1758.989 kb on + strand, within potH at 1758.990 kb on - strand, within potH at 1758.990 kb on - strand, within potH at 1759.002 kb on - strand, within potH at 1759.088 kb on + strand, within potH at 1759.089 kb on - strand, within potH at 1759.124 kb on - strand, within potH at 1759.173 kb on + strand, within potH at 1759.174 kb on - strand, within potH at 1759.175 kb on + strand, within potH at 1759.175 kb on + strand, within potH at 1759.279 kb on - strand at 1759.369 kb on - strand at 1759.391 kb on - strand at 1759.434 kb on - strand, within potG at 1759.466 kb on - strand, within potG at 1759.466 kb on - strand, within potG at 1759.489 kb on - strand, within potG at 1759.543 kb on + strand, within potG at 1759.543 kb on + strand, within potG at 1759.652 kb on - strand, within potG at 1759.695 kb on - strand, within potG at 1759.716 kb on - strand, within potG at 1759.919 kb on - strand, within potG at 1759.919 kb on - strand, within potG at 1760.014 kb on - strand, within potG at 1760.129 kb on + strand, within potG at 1760.199 kb on + strand, within potG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,757,333 + ybjO MCAODC_25155 0.80 +0.2 1,757,334 - ybjO MCAODC_25155 0.80 -0.2 1,757,402 + +0.3 1,757,448 + -1.4 1,757,448 + +0.6 1,757,449 - -2.2 1,757,458 + +0.1 1,757,458 + -0.4 1,757,458 + -2.7 1,757,458 + +0.3 1,757,458 + -2.1 1,757,458 + +0.4 1,757,458 + -0.5 1,757,459 - -0.7 1,757,459 - +0.8 1,757,459 - -0.9 1,757,459 - -0.6 1,757,462 + +1.2 1,757,463 - +0.3 1,757,551 - +1.1 1,757,551 - -0.0 1,757,719 + potI MCAODC_25160 0.27 -0.6 1,757,719 + potI MCAODC_25160 0.27 +0.9 1,757,720 - potI MCAODC_25160 0.27 +1.0 1,757,770 + potI MCAODC_25160 0.33 -0.8 1,757,860 + potI MCAODC_25160 0.44 -3.0 1,757,874 + potI MCAODC_25160 0.46 +0.7 1,757,874 + potI MCAODC_25160 0.46 +1.3 1,757,874 + potI MCAODC_25160 0.46 -2.8 1,757,874 + potI MCAODC_25160 0.46 -0.7 1,757,875 - potI MCAODC_25160 0.46 +0.2 1,757,875 - potI MCAODC_25160 0.46 -1.2 1,757,875 - potI MCAODC_25160 0.46 +0.8 1,757,875 - potI MCAODC_25160 0.46 -0.4 1,757,917 + potI MCAODC_25160 0.51 -0.5 1,757,963 + potI MCAODC_25160 0.56 -0.0 1,757,964 - potI MCAODC_25160 0.56 +0.7 1,757,966 + potI MCAODC_25160 0.56 -2.8 1,758,003 - potI MCAODC_25160 0.61 +0.4 1,758,134 + potI MCAODC_25160 0.76 -0.2 1,758,318 - -2.3 1,758,391 + -4.6 1,758,464 - potH MCAODC_25165 0.14 -0.4 1,758,561 + potH MCAODC_25165 0.24 +0.1 1,758,562 - potH MCAODC_25165 0.24 -1.6 1,758,720 + potH MCAODC_25165 0.41 -3.1 1,758,722 + potH MCAODC_25165 0.41 -0.3 1,758,722 + potH MCAODC_25165 0.41 -2.6 1,758,723 - potH MCAODC_25165 0.41 +0.7 1,758,723 - potH MCAODC_25165 0.41 -0.5 1,758,723 - potH MCAODC_25165 0.41 -0.9 1,758,790 - potH MCAODC_25165 0.48 -0.6 1,758,814 + potH MCAODC_25165 0.51 +1.4 1,758,877 + potH MCAODC_25165 0.57 +0.9 1,758,878 - potH MCAODC_25165 0.57 -0.3 1,758,881 - potH MCAODC_25165 0.58 -0.6 1,758,885 + potH MCAODC_25165 0.58 +0.4 1,758,885 + potH MCAODC_25165 0.58 -0.7 1,758,886 - potH MCAODC_25165 0.58 -1.3 1,758,989 + potH MCAODC_25165 0.69 -0.5 1,758,989 + potH MCAODC_25165 0.69 +0.1 1,758,990 - potH MCAODC_25165 0.69 -0.8 1,758,990 - potH MCAODC_25165 0.69 -0.6 1,759,002 - potH MCAODC_25165 0.70 +0.1 1,759,088 + potH MCAODC_25165 0.79 -0.2 1,759,089 - potH MCAODC_25165 0.79 +1.0 1,759,124 - potH MCAODC_25165 0.83 +0.1 1,759,173 + potH MCAODC_25165 0.88 -0.1 1,759,174 - potH MCAODC_25165 0.88 +0.2 1,759,175 + potH MCAODC_25165 0.88 +1.0 1,759,175 + potH MCAODC_25165 0.88 +0.1 1,759,279 - -1.5 1,759,369 - -1.1 1,759,391 - -0.2 1,759,434 - potG MCAODC_25170 0.12 -0.4 1,759,466 - potG MCAODC_25170 0.15 +0.9 1,759,466 - potG MCAODC_25170 0.15 -0.2 1,759,489 - potG MCAODC_25170 0.17 -0.1 1,759,543 + potG MCAODC_25170 0.22 +0.2 1,759,543 + potG MCAODC_25170 0.22 -0.3 1,759,652 - potG MCAODC_25170 0.32 +0.0 1,759,695 - potG MCAODC_25170 0.35 -0.1 1,759,716 - potG MCAODC_25170 0.37 +0.1 1,759,919 - potG MCAODC_25170 0.55 -0.7 1,759,919 - potG MCAODC_25170 0.55 -0.1 1,760,014 - potG MCAODC_25170 0.63 -2.6 1,760,129 + potG MCAODC_25170 0.74 +0.5 1,760,199 + potG MCAODC_25170 0.80 -0.3
Or see this region's nucleotide sequence