Strain Fitness in Escherichia coli ECRC101 around MCAODC_25165

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjO and potI are separated by 59 nucleotidespotI and potH overlap by 4 nucleotidespotH and potG are separated by 9 nucleotides MCAODC_25155: ybjO - Inner membrane protein YbjO, at 1,756,941 to 1,757,429 ybjO MCAODC_25160: potI - putrescine ABC transporter permease PotI, at 1,757,489 to 1,758,334 potI MCAODC_25165: potH - putrescine ABC transporter permease PotH, at 1,758,331 to 1,759,284 potH MCAODC_25170: potG - putrescine ABC transporter ATP-binding subunit PotG, at 1,759,294 to 1,760,427 potG Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1757.333 kb on + strand, within ybjOat 1757.334 kb on - strand, within ybjOat 1757.402 kb on + strandat 1757.448 kb on + strandat 1757.448 kb on + strandat 1757.449 kb on - strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.458 kb on + strandat 1757.459 kb on - strandat 1757.459 kb on - strandat 1757.459 kb on - strandat 1757.459 kb on - strandat 1757.462 kb on + strandat 1757.463 kb on - strandat 1757.551 kb on - strandat 1757.551 kb on - strandat 1757.719 kb on + strand, within potIat 1757.719 kb on + strand, within potIat 1757.720 kb on - strand, within potIat 1757.770 kb on + strand, within potIat 1757.860 kb on + strand, within potIat 1757.874 kb on + strand, within potIat 1757.874 kb on + strand, within potIat 1757.874 kb on + strand, within potIat 1757.874 kb on + strand, within potIat 1757.875 kb on - strand, within potIat 1757.875 kb on - strand, within potIat 1757.875 kb on - strand, within potIat 1757.875 kb on - strand, within potIat 1757.917 kb on + strand, within potIat 1757.963 kb on + strand, within potIat 1757.964 kb on - strand, within potIat 1757.966 kb on + strand, within potIat 1758.003 kb on - strand, within potIat 1758.134 kb on + strand, within potIat 1758.318 kb on - strandat 1758.391 kb on + strandat 1758.464 kb on - strand, within potHat 1758.561 kb on + strand, within potHat 1758.562 kb on - strand, within potHat 1758.720 kb on + strand, within potHat 1758.722 kb on + strand, within potHat 1758.722 kb on + strand, within potHat 1758.723 kb on - strand, within potHat 1758.723 kb on - strand, within potHat 1758.723 kb on - strand, within potHat 1758.790 kb on - strand, within potHat 1758.814 kb on + strand, within potHat 1758.877 kb on + strand, within potHat 1758.878 kb on - strand, within potHat 1758.881 kb on - strand, within potHat 1758.885 kb on + strand, within potHat 1758.885 kb on + strand, within potHat 1758.886 kb on - strand, within potHat 1758.989 kb on + strand, within potHat 1758.989 kb on + strand, within potHat 1758.990 kb on - strand, within potHat 1758.990 kb on - strand, within potHat 1759.002 kb on - strand, within potHat 1759.088 kb on + strand, within potHat 1759.089 kb on - strand, within potHat 1759.124 kb on - strand, within potHat 1759.173 kb on + strand, within potHat 1759.174 kb on - strand, within potHat 1759.175 kb on + strand, within potHat 1759.175 kb on + strand, within potHat 1759.279 kb on - strandat 1759.369 kb on - strandat 1759.391 kb on - strandat 1759.434 kb on - strand, within potGat 1759.466 kb on - strand, within potGat 1759.466 kb on - strand, within potGat 1759.489 kb on - strand, within potGat 1759.543 kb on + strand, within potGat 1759.543 kb on + strand, within potGat 1759.652 kb on - strand, within potGat 1759.695 kb on - strand, within potGat 1759.716 kb on - strand, within potGat 1759.919 kb on - strand, within potGat 1759.919 kb on - strand, within potGat 1760.014 kb on - strand, within potGat 1760.129 kb on + strand, within potGat 1760.199 kb on + strand, within potG

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,757,333 + ybjO MCAODC_25155 0.80 +0.2
1,757,334 - ybjO MCAODC_25155 0.80 -0.2
1,757,402 + +0.3
1,757,448 + -1.4
1,757,448 + +0.6
1,757,449 - -2.2
1,757,458 + +0.1
1,757,458 + -0.4
1,757,458 + -2.7
1,757,458 + +0.3
1,757,458 + -2.1
1,757,458 + +0.4
1,757,458 + -0.5
1,757,459 - -0.7
1,757,459 - +0.8
1,757,459 - -0.9
1,757,459 - -0.6
1,757,462 + +1.2
1,757,463 - +0.3
1,757,551 - +1.1
1,757,551 - -0.0
1,757,719 + potI MCAODC_25160 0.27 -0.6
1,757,719 + potI MCAODC_25160 0.27 +0.9
1,757,720 - potI MCAODC_25160 0.27 +1.0
1,757,770 + potI MCAODC_25160 0.33 -0.8
1,757,860 + potI MCAODC_25160 0.44 -3.0
1,757,874 + potI MCAODC_25160 0.46 +0.7
1,757,874 + potI MCAODC_25160 0.46 +1.3
1,757,874 + potI MCAODC_25160 0.46 -2.8
1,757,874 + potI MCAODC_25160 0.46 -0.7
1,757,875 - potI MCAODC_25160 0.46 +0.2
1,757,875 - potI MCAODC_25160 0.46 -1.2
1,757,875 - potI MCAODC_25160 0.46 +0.8
1,757,875 - potI MCAODC_25160 0.46 -0.4
1,757,917 + potI MCAODC_25160 0.51 -0.5
1,757,963 + potI MCAODC_25160 0.56 -0.0
1,757,964 - potI MCAODC_25160 0.56 +0.7
1,757,966 + potI MCAODC_25160 0.56 -2.8
1,758,003 - potI MCAODC_25160 0.61 +0.4
1,758,134 + potI MCAODC_25160 0.76 -0.2
1,758,318 - -2.3
1,758,391 + -4.6
1,758,464 - potH MCAODC_25165 0.14 -0.4
1,758,561 + potH MCAODC_25165 0.24 +0.1
1,758,562 - potH MCAODC_25165 0.24 -1.6
1,758,720 + potH MCAODC_25165 0.41 -3.1
1,758,722 + potH MCAODC_25165 0.41 -0.3
1,758,722 + potH MCAODC_25165 0.41 -2.6
1,758,723 - potH MCAODC_25165 0.41 +0.7
1,758,723 - potH MCAODC_25165 0.41 -0.5
1,758,723 - potH MCAODC_25165 0.41 -0.9
1,758,790 - potH MCAODC_25165 0.48 -0.6
1,758,814 + potH MCAODC_25165 0.51 +1.4
1,758,877 + potH MCAODC_25165 0.57 +0.9
1,758,878 - potH MCAODC_25165 0.57 -0.3
1,758,881 - potH MCAODC_25165 0.58 -0.6
1,758,885 + potH MCAODC_25165 0.58 +0.4
1,758,885 + potH MCAODC_25165 0.58 -0.7
1,758,886 - potH MCAODC_25165 0.58 -1.3
1,758,989 + potH MCAODC_25165 0.69 -0.5
1,758,989 + potH MCAODC_25165 0.69 +0.1
1,758,990 - potH MCAODC_25165 0.69 -0.8
1,758,990 - potH MCAODC_25165 0.69 -0.6
1,759,002 - potH MCAODC_25165 0.70 +0.1
1,759,088 + potH MCAODC_25165 0.79 -0.2
1,759,089 - potH MCAODC_25165 0.79 +1.0
1,759,124 - potH MCAODC_25165 0.83 +0.1
1,759,173 + potH MCAODC_25165 0.88 -0.1
1,759,174 - potH MCAODC_25165 0.88 +0.2
1,759,175 + potH MCAODC_25165 0.88 +1.0
1,759,175 + potH MCAODC_25165 0.88 +0.1
1,759,279 - -1.5
1,759,369 - -1.1
1,759,391 - -0.2
1,759,434 - potG MCAODC_25170 0.12 -0.4
1,759,466 - potG MCAODC_25170 0.15 +0.9
1,759,466 - potG MCAODC_25170 0.15 -0.2
1,759,489 - potG MCAODC_25170 0.17 -0.1
1,759,543 + potG MCAODC_25170 0.22 +0.2
1,759,543 + potG MCAODC_25170 0.22 -0.3
1,759,652 - potG MCAODC_25170 0.32 +0.0
1,759,695 - potG MCAODC_25170 0.35 -0.1
1,759,716 - potG MCAODC_25170 0.37 +0.1
1,759,919 - potG MCAODC_25170 0.55 -0.7
1,759,919 - potG MCAODC_25170 0.55 -0.1
1,760,014 - potG MCAODC_25170 0.63 -2.6
1,760,129 + potG MCAODC_25170 0.74 +0.5
1,760,199 + potG MCAODC_25170 0.80 -0.3

Or see this region's nucleotide sequence