Strain Fitness in Escherichia coli ECRC101 around MCAODC_24355

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_24345 and MCAODC_24350 are separated by 255 nucleotidesMCAODC_24350 and MCAODC_24355 are separated by 159 nucleotidesMCAODC_24355 and MCAODC_24360 are separated by 220 nucleotidesMCAODC_24360 and MCAODC_24365 are separated by 1 nucleotides MCAODC_24345: MCAODC_24345 - holin, at 1,594,115 to 1,594,321 _24345 MCAODC_24350: MCAODC_24350 - hypothetical protein, at 1,594,577 to 1,594,849 _24350 MCAODC_24355: MCAODC_24355 - SAR-endolysin, at 1,595,009 to 1,595,542 _24355 MCAODC_24360: MCAODC_24360 - hypothetical protein, at 1,595,763 to 1,595,876 _24360 MCAODC_24365: MCAODC_24365 - lysis protein, at 1,595,878 to 1,596,345 _24365 Position (kb) 1595 1596Strain fitness (log2 ratio) -2 -1 0 1 2at 1594.319 kb on + strandat 1594.350 kb on + strandat 1594.351 kb on - strandat 1594.365 kb on + strandat 1594.462 kb on + strandat 1594.595 kb on + strandat 1594.596 kb on - strandat 1594.599 kb on - strandat 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.662 kb on - strand, within MCAODC_24350at 1594.687 kb on + strand, within MCAODC_24350at 1594.691 kb on - strand, within MCAODC_24350at 1594.733 kb on - strand, within MCAODC_24350at 1594.736 kb on - strand, within MCAODC_24350at 1594.804 kb on + strand, within MCAODC_24350at 1594.824 kb on - strandat 1594.851 kb on - strandat 1594.893 kb on + strandat 1594.894 kb on - strandat 1594.894 kb on - strandat 1594.934 kb on + strandat 1594.935 kb on - strandat 1594.935 kb on - strandat 1594.966 kb on + strandat 1594.966 kb on + strandat 1594.967 kb on - strandat 1594.968 kb on + strandat 1594.970 kb on + strandat 1594.975 kb on - strandat 1594.979 kb on + strandat 1595.189 kb on - strand, within MCAODC_24355at 1595.198 kb on - strand, within MCAODC_24355at 1595.438 kb on - strand, within MCAODC_24355at 1595.473 kb on + strand, within MCAODC_24355at 1595.480 kb on + strand, within MCAODC_24355at 1595.625 kb on - strandat 1595.701 kb on - strandat 1595.707 kb on - strandat 1595.715 kb on - strandat 1595.715 kb on - strandat 1595.733 kb on + strandat 1595.733 kb on + strandat 1595.803 kb on + strand, within MCAODC_24360at 1595.831 kb on + strand, within MCAODC_24360at 1595.877 kb on + strandat 1595.974 kb on + strand, within MCAODC_24365at 1596.030 kb on + strand, within MCAODC_24365at 1596.031 kb on - strand, within MCAODC_24365at 1596.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,594,319 + +0.4
1,594,350 + +0.8
1,594,351 - +0.7
1,594,365 + -1.0
1,594,462 + +1.0
1,594,595 + +2.2
1,594,596 - +0.6
1,594,599 - -0.0
1,594,661 + MCAODC_24350 0.31 +1.8
1,594,661 + MCAODC_24350 0.31 +1.2
1,594,661 + MCAODC_24350 0.31 -2.6
1,594,661 + MCAODC_24350 0.31 +1.0
1,594,662 - MCAODC_24350 0.31 -2.2
1,594,687 + MCAODC_24350 0.40 -1.0
1,594,691 - MCAODC_24350 0.42 +2.7
1,594,733 - MCAODC_24350 0.57 -1.3
1,594,736 - MCAODC_24350 0.58 -0.3
1,594,804 + MCAODC_24350 0.83 -0.4
1,594,824 - +0.1
1,594,851 - -0.9
1,594,893 + -0.4
1,594,894 - -1.9
1,594,894 - +0.5
1,594,934 + -2.0
1,594,935 - -2.4
1,594,935 - +0.5
1,594,966 + +1.0
1,594,966 + -0.6
1,594,967 - +0.0
1,594,968 + -0.6
1,594,970 + -1.4
1,594,975 - +0.9
1,594,979 + -0.8
1,595,189 - MCAODC_24355 0.34 +0.9
1,595,198 - MCAODC_24355 0.35 -0.4
1,595,438 - MCAODC_24355 0.80 +0.3
1,595,473 + MCAODC_24355 0.87 -1.3
1,595,480 + MCAODC_24355 0.88 -0.0
1,595,625 - -0.2
1,595,701 - +0.1
1,595,707 - +0.4
1,595,715 - -0.4
1,595,715 - +0.2
1,595,733 + -0.4
1,595,733 + -0.5
1,595,803 + MCAODC_24360 0.35 +0.7
1,595,831 + MCAODC_24360 0.60 -0.0
1,595,877 + +1.1
1,595,974 + MCAODC_24365 0.21 -0.4
1,596,030 + MCAODC_24365 0.32 -2.0
1,596,031 - MCAODC_24365 0.33 +1.7
1,596,528 - +0.4

Or see this region's nucleotide sequence