Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_24120 and gfcB are separated by 106 nucleotides gfcB and gfcC overlap by 4 nucleotides gfcC and gfcD overlap by 1 nucleotides
MCAODC_24120: MCAODC_24120 - Threonine-rich inner membrane protein GfcA, at 1,551,472 to 1,551,777
_24120
MCAODC_24125: gfcB - Uncharacterized lipoprotein GfcB, at 1,551,884 to 1,552,528
gfcB
MCAODC_24130: gfcC - Uncharacterized protein GfcC, at 1,552,525 to 1,553,271
gfcC
MCAODC_24135: gfcD - Uncharacterized lipoprotein GfcD, at 1,553,271 to 1,555,367
gfcD
Position (kb) 1552
1553
1554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1551.576 kb on + strand, within MCAODC_24120 at 1551.707 kb on + strand, within MCAODC_24120 at 1551.775 kb on + strand at 1551.864 kb on + strand at 1552.087 kb on + strand, within gfcB at 1552.087 kb on + strand, within gfcB at 1552.087 kb on + strand, within gfcB at 1552.089 kb on + strand, within gfcB at 1552.089 kb on + strand, within gfcB at 1552.180 kb on + strand, within gfcB at 1552.236 kb on + strand, within gfcB at 1552.236 kb on + strand, within gfcB at 1552.369 kb on + strand, within gfcB at 1552.476 kb on + strand at 1552.476 kb on + strand at 1552.513 kb on + strand at 1552.530 kb on + strand at 1552.536 kb on - strand at 1552.559 kb on + strand at 1552.609 kb on + strand, within gfcC at 1552.824 kb on + strand, within gfcC at 1552.860 kb on + strand, within gfcC at 1552.860 kb on + strand, within gfcC at 1552.939 kb on + strand, within gfcC at 1552.939 kb on + strand, within gfcC at 1552.948 kb on + strand, within gfcC at 1552.948 kb on + strand, within gfcC at 1552.948 kb on + strand, within gfcC at 1552.971 kb on + strand, within gfcC at 1552.972 kb on - strand, within gfcC at 1552.975 kb on - strand, within gfcC at 1552.975 kb on - strand, within gfcC at 1553.201 kb on + strand at 1553.287 kb on - strand at 1553.293 kb on + strand at 1553.294 kb on - strand at 1553.294 kb on - strand at 1553.338 kb on + strand at 1553.339 kb on - strand at 1553.526 kb on - strand, within gfcD at 1553.543 kb on + strand, within gfcD at 1553.544 kb on - strand, within gfcD at 1553.547 kb on + strand, within gfcD at 1553.547 kb on + strand, within gfcD at 1553.547 kb on + strand, within gfcD at 1553.548 kb on - strand, within gfcD at 1553.548 kb on - strand, within gfcD at 1553.548 kb on - strand, within gfcD at 1553.549 kb on + strand, within gfcD at 1553.549 kb on + strand, within gfcD at 1553.697 kb on + strand, within gfcD at 1553.777 kb on + strand, within gfcD at 1553.780 kb on + strand, within gfcD at 1553.780 kb on + strand, within gfcD at 1553.807 kb on + strand, within gfcD at 1553.808 kb on - strand, within gfcD at 1553.811 kb on + strand, within gfcD at 1553.811 kb on + strand, within gfcD at 1553.811 kb on + strand, within gfcD at 1553.812 kb on - strand, within gfcD at 1553.812 kb on - strand, within gfcD at 1553.940 kb on + strand, within gfcD at 1553.955 kb on + strand, within gfcD at 1554.052 kb on - strand, within gfcD at 1554.144 kb on + strand, within gfcD at 1554.178 kb on - strand, within gfcD at 1554.178 kb on - strand, within gfcD at 1554.213 kb on + strand, within gfcD at 1554.214 kb on - strand, within gfcD at 1554.264 kb on + strand, within gfcD at 1554.264 kb on + strand, within gfcD at 1554.264 kb on + strand, within gfcD at 1554.265 kb on - strand, within gfcD at 1554.265 kb on - strand, within gfcD at 1554.265 kb on - strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.266 kb on + strand, within gfcD at 1554.267 kb on - strand, within gfcD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,551,576 + MCAODC_24120 0.34 +0.1 1,551,707 + MCAODC_24120 0.77 -0.1 1,551,775 + -0.0 1,551,864 + +1.2 1,552,087 + gfcB MCAODC_24125 0.31 -0.9 1,552,087 + gfcB MCAODC_24125 0.31 -1.4 1,552,087 + gfcB MCAODC_24125 0.31 -1.2 1,552,089 + gfcB MCAODC_24125 0.32 -0.4 1,552,089 + gfcB MCAODC_24125 0.32 +0.1 1,552,180 + gfcB MCAODC_24125 0.46 -0.6 1,552,236 + gfcB MCAODC_24125 0.55 +0.3 1,552,236 + gfcB MCAODC_24125 0.55 -0.6 1,552,369 + gfcB MCAODC_24125 0.75 -0.6 1,552,476 + -1.1 1,552,476 + +1.1 1,552,513 + -0.9 1,552,530 + +0.0 1,552,536 - +2.5 1,552,559 + +0.8 1,552,609 + gfcC MCAODC_24130 0.11 -1.3 1,552,824 + gfcC MCAODC_24130 0.40 -0.4 1,552,860 + gfcC MCAODC_24130 0.45 -0.4 1,552,860 + gfcC MCAODC_24130 0.45 +0.7 1,552,939 + gfcC MCAODC_24130 0.55 -1.3 1,552,939 + gfcC MCAODC_24130 0.55 +1.8 1,552,948 + gfcC MCAODC_24130 0.57 -0.0 1,552,948 + gfcC MCAODC_24130 0.57 +0.3 1,552,948 + gfcC MCAODC_24130 0.57 +0.4 1,552,971 + gfcC MCAODC_24130 0.60 +0.6 1,552,972 - gfcC MCAODC_24130 0.60 +0.8 1,552,975 - gfcC MCAODC_24130 0.60 -0.9 1,552,975 - gfcC MCAODC_24130 0.60 -0.6 1,553,201 + -0.3 1,553,287 - -0.6 1,553,293 + -0.9 1,553,294 - +1.9 1,553,294 - -0.5 1,553,338 + +1.1 1,553,339 - +0.7 1,553,526 - gfcD MCAODC_24135 0.12 +1.1 1,553,543 + gfcD MCAODC_24135 0.13 -1.7 1,553,544 - gfcD MCAODC_24135 0.13 +0.1 1,553,547 + gfcD MCAODC_24135 0.13 +0.3 1,553,547 + gfcD MCAODC_24135 0.13 +0.7 1,553,547 + gfcD MCAODC_24135 0.13 -0.7 1,553,548 - gfcD MCAODC_24135 0.13 -1.1 1,553,548 - gfcD MCAODC_24135 0.13 -0.8 1,553,548 - gfcD MCAODC_24135 0.13 -1.2 1,553,549 + gfcD MCAODC_24135 0.13 -0.4 1,553,549 + gfcD MCAODC_24135 0.13 -0.0 1,553,697 + gfcD MCAODC_24135 0.20 -0.4 1,553,777 + gfcD MCAODC_24135 0.24 -0.3 1,553,780 + gfcD MCAODC_24135 0.24 +1.0 1,553,780 + gfcD MCAODC_24135 0.24 +0.1 1,553,807 + gfcD MCAODC_24135 0.26 +0.5 1,553,808 - gfcD MCAODC_24135 0.26 +1.3 1,553,811 + gfcD MCAODC_24135 0.26 -1.1 1,553,811 + gfcD MCAODC_24135 0.26 -2.8 1,553,811 + gfcD MCAODC_24135 0.26 +0.9 1,553,812 - gfcD MCAODC_24135 0.26 +0.1 1,553,812 - gfcD MCAODC_24135 0.26 +0.7 1,553,940 + gfcD MCAODC_24135 0.32 -0.5 1,553,955 + gfcD MCAODC_24135 0.33 -0.2 1,554,052 - gfcD MCAODC_24135 0.37 +0.8 1,554,144 + gfcD MCAODC_24135 0.42 +3.1 1,554,178 - gfcD MCAODC_24135 0.43 +0.5 1,554,178 - gfcD MCAODC_24135 0.43 -1.4 1,554,213 + gfcD MCAODC_24135 0.45 +0.6 1,554,214 - gfcD MCAODC_24135 0.45 -0.1 1,554,264 + gfcD MCAODC_24135 0.47 +0.9 1,554,264 + gfcD MCAODC_24135 0.47 -0.1 1,554,264 + gfcD MCAODC_24135 0.47 +0.1 1,554,265 - gfcD MCAODC_24135 0.47 -0.7 1,554,265 - gfcD MCAODC_24135 0.47 -3.7 1,554,265 - gfcD MCAODC_24135 0.47 +0.3 1,554,266 + gfcD MCAODC_24135 0.47 -0.2 1,554,266 + gfcD MCAODC_24135 0.47 +2.9 1,554,266 + gfcD MCAODC_24135 0.47 +0.1 1,554,266 + gfcD MCAODC_24135 0.47 +0.5 1,554,266 + gfcD MCAODC_24135 0.47 +2.9 1,554,266 + gfcD MCAODC_24135 0.47 +0.3 1,554,266 + gfcD MCAODC_24135 0.47 +0.6 1,554,266 + gfcD MCAODC_24135 0.47 +0.3 1,554,267 - gfcD MCAODC_24135 0.47 +2.3
Or see this region's nucleotide sequence