Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23690 and tnpB are separated by 75 nucleotides tnpB and tnpB overlap by 4 nucleotides tnpB and MCAODC_23705 are separated by 49 nucleotides MCAODC_23705 and MCAODC_23710 are separated by 325 nucleotides MCAODC_23710 and MCAODC_23715 are separated by 161 nucleotides
MCAODC_23690: MCAODC_23690 - DNA-binding protein, at 1,455,850 to 1,456,161
_23690
MCAODC_23695: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,456,237 to 1,456,617
tnpB
MCAODC_23700: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,456,614 to 1,456,961
tnpB
MCAODC_23705: MCAODC_23705 - IS66-like element ISEc8 family transposase, at 1,457,011 to 1,458,549
_23705
MCAODC_23710: MCAODC_23710 - hypothetical protein, at 1,458,875 to 1,459,144
_23710
MCAODC_23715: MCAODC_23715 - DEAD/DEAH box helicase, at 1,459,306 to 1,461,666
_23715
Position (kb)
1457
1458
1459 Strain fitness (log2 ratio)
-2
-1
0
1 at 1458.843 kb on - strand at 1458.844 kb on + strand at 1458.845 kb on - strand at 1458.908 kb on + strand, within MCAODC_23710 at 1458.944 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1459.104 kb on - strand, within MCAODC_23710 at 1459.122 kb on + strand at 1459.143 kb on - strand at 1459.151 kb on - strand at 1459.210 kb on - strand at 1459.216 kb on + strand at 1459.231 kb on + strand at 1459.334 kb on - strand at 1459.358 kb on + strand at 1459.401 kb on - strand at 1459.473 kb on - strand at 1459.480 kb on + strand at 1459.481 kb on - strand at 1459.481 kb on - strand at 1459.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,458,843 - +0.3 1,458,844 + +0.2 1,458,845 - -1.2 1,458,908 + MCAODC_23710 0.12 +0.8 1,458,944 - MCAODC_23710 0.26 +1.6 1,458,968 - MCAODC_23710 0.34 -1.7 1,458,968 - MCAODC_23710 0.34 -1.2 1,459,104 - MCAODC_23710 0.85 +0.0 1,459,122 + +0.6 1,459,143 - -1.6 1,459,151 - -1.0 1,459,210 - -0.7 1,459,216 + -1.9 1,459,231 + +0.1 1,459,334 - -0.6 1,459,358 + +0.1 1,459,401 - +0.4 1,459,473 - +0.4 1,459,480 + -2.3 1,459,481 - -0.7 1,459,481 - +0.4 1,459,481 - +0.9
Or see this region's nucleotide sequence