Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23585 and MCAODC_23590 are separated by 871 nucleotides MCAODC_23590 and rpmE2-2 are separated by 301 nucleotides rpmE2-2 and MCAODC_23605 are separated by 424 nucleotides
MCAODC_23585: MCAODC_23585 - Membrane protein, at 1,441,635 to 1,442,306
_23585
MCAODC_23590: MCAODC_23590 - Hok/Gef family protein, at 1,443,178 to 1,443,318
_23590
MCAODC_23600: rpmE2-2 - type B 50S ribosomal protein L31, at 1,443,620 to 1,443,883
rpmE2-2
MCAODC_23605: MCAODC_23605 - complement resistance protein TraT, at 1,444,308 to 1,444,436
_23605
Position (kb)
1443
1444 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1442.238 kb on + strand, within MCAODC_23585 at 1442.601 kb on + strand at 1442.606 kb on - strand at 1442.932 kb on + strand at 1442.932 kb on + strand at 1442.932 kb on + strand at 1442.932 kb on + strand at 1442.932 kb on + strand at 1442.933 kb on - strand at 1442.933 kb on - strand at 1442.933 kb on - strand at 1442.933 kb on - strand at 1442.933 kb on - strand at 1442.998 kb on + strand at 1443.286 kb on + strand, within MCAODC_23590 at 1443.287 kb on - strand, within MCAODC_23590 at 1443.287 kb on - strand, within MCAODC_23590 at 1443.319 kb on - strand at 1443.477 kb on - strand at 1443.553 kb on - strand at 1443.553 kb on - strand at 1443.553 kb on - strand at 1443.555 kb on - strand at 1443.680 kb on - strand, within rpmE2-2 at 1443.680 kb on - strand, within rpmE2-2 at 1443.713 kb on - strand, within rpmE2-2 at 1443.714 kb on + strand, within rpmE2-2 at 1443.754 kb on - strand, within rpmE2-2 at 1443.760 kb on - strand, within rpmE2-2 at 1443.765 kb on - strand, within rpmE2-2 at 1443.830 kb on - strand, within rpmE2-2 at 1443.846 kb on - strand, within rpmE2-2 at 1443.854 kb on - strand, within rpmE2-2 at 1443.901 kb on - strand at 1443.924 kb on - strand at 1443.924 kb on - strand at 1443.928 kb on - strand at 1444.106 kb on - strand at 1444.123 kb on + strand at 1444.125 kb on + strand at 1444.225 kb on + strand at 1444.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,442,238 + MCAODC_23585 0.90 -1.3 1,442,601 + +3.1 1,442,606 - +0.3 1,442,932 + +0.1 1,442,932 + -2.4 1,442,932 + -1.0 1,442,932 + +0.5 1,442,932 + -2.6 1,442,933 - -0.0 1,442,933 - +0.1 1,442,933 - +0.1 1,442,933 - -1.1 1,442,933 - -0.0 1,442,998 + +0.3 1,443,286 + MCAODC_23590 0.77 -1.0 1,443,287 - MCAODC_23590 0.77 -1.2 1,443,287 - MCAODC_23590 0.77 +0.0 1,443,319 - -1.1 1,443,477 - -0.7 1,443,553 - -0.3 1,443,553 - -1.7 1,443,553 - +0.8 1,443,555 - -0.9 1,443,680 - rpmE2-2 MCAODC_23600 0.23 -0.0 1,443,680 - rpmE2-2 MCAODC_23600 0.23 +1.1 1,443,713 - rpmE2-2 MCAODC_23600 0.35 +0.1 1,443,714 + rpmE2-2 MCAODC_23600 0.36 +1.9 1,443,754 - rpmE2-2 MCAODC_23600 0.51 -0.6 1,443,760 - rpmE2-2 MCAODC_23600 0.53 -0.0 1,443,765 - rpmE2-2 MCAODC_23600 0.55 +0.1 1,443,830 - rpmE2-2 MCAODC_23600 0.80 +1.3 1,443,846 - rpmE2-2 MCAODC_23600 0.86 +0.3 1,443,854 - rpmE2-2 MCAODC_23600 0.89 +0.6 1,443,901 - +0.3 1,443,924 - -0.4 1,443,924 - -1.1 1,443,928 - +0.3 1,444,106 - -0.1 1,444,123 + +1.4 1,444,125 + -0.6 1,444,225 + +0.1 1,444,226 - +0.2
Or see this region's nucleotide sequence