Strain Fitness in Escherichia coli ECRC101 around MCAODC_23445

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23435 and MCAODC_23440 are separated by 88 nucleotidesMCAODC_23440 and MCAODC_23445 are separated by 51 nucleotidesMCAODC_23445 and MCAODC_23450 are separated by 342 nucleotides MCAODC_23435: MCAODC_23435 - Oligogalacturonate-specific porin protein KdgM, at 1,415,812 to 1,416,084 _23435 MCAODC_23440: MCAODC_23440 - hypothetical protein, at 1,416,173 to 1,416,352 _23440 MCAODC_23445: MCAODC_23445 - hypothetical protein, at 1,416,404 to 1,416,598 _23445 MCAODC_23450: MCAODC_23450 - IS150 conserved protein InsB, at 1,416,941 to 1,417,069 _23450 Position (kb) 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1415.426 kb on + strandat 1415.427 kb on - strandat 1415.430 kb on + strandat 1415.430 kb on + strandat 1415.430 kb on + strandat 1415.431 kb on - strandat 1415.431 kb on - strandat 1415.565 kb on - strandat 1415.582 kb on - strandat 1415.582 kb on - strandat 1415.582 kb on - strandat 1415.583 kb on + strandat 1415.593 kb on + strandat 1415.594 kb on - strandat 1415.595 kb on + strandat 1415.595 kb on + strandat 1415.595 kb on + strandat 1415.595 kb on + strandat 1415.595 kb on + strandat 1415.596 kb on - strandat 1415.596 kb on - strandat 1415.599 kb on + strandat 1415.672 kb on + strandat 1415.722 kb on - strandat 1415.775 kb on + strandat 1415.781 kb on + strandat 1415.783 kb on + strandat 1415.813 kb on + strandat 1415.830 kb on + strandat 1415.830 kb on + strandat 1416.032 kb on + strand, within MCAODC_23435at 1416.032 kb on + strand, within MCAODC_23435at 1416.033 kb on - strand, within MCAODC_23435at 1416.104 kb on + strandat 1416.137 kb on - strandat 1416.137 kb on - strandat 1416.165 kb on + strandat 1416.168 kb on + strandat 1416.168 kb on + strandat 1416.180 kb on + strandat 1416.223 kb on + strand, within MCAODC_23440at 1416.223 kb on + strand, within MCAODC_23440at 1416.354 kb on + strandat 1416.354 kb on + strandat 1416.366 kb on + strandat 1416.390 kb on - strandat 1416.420 kb on + strandat 1416.510 kb on - strand, within MCAODC_23445at 1416.563 kb on - strand, within MCAODC_23445at 1416.596 kb on + strandat 1416.665 kb on + strandat 1416.711 kb on + strandat 1416.729 kb on + strandat 1416.729 kb on + strandat 1416.730 kb on - strandat 1416.742 kb on + strandat 1416.746 kb on - strandat 1416.778 kb on + strandat 1416.778 kb on + strandat 1416.779 kb on - strandat 1417.032 kb on - strand, within MCAODC_23450at 1417.067 kb on + strandat 1417.071 kb on - strandat 1417.078 kb on + strandat 1417.079 kb on - strandat 1417.081 kb on - strandat 1417.127 kb on - strandat 1417.127 kb on - strandat 1417.198 kb on - strandat 1417.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,415,426 + +0.3
1,415,427 - +0.9
1,415,430 + +0.3
1,415,430 + -1.0
1,415,430 + -1.6
1,415,431 - -3.2
1,415,431 - +0.4
1,415,565 - -0.7
1,415,582 - -0.6
1,415,582 - -1.5
1,415,582 - +0.1
1,415,583 + -0.3
1,415,593 + +0.6
1,415,594 - +1.0
1,415,595 + +1.2
1,415,595 + +0.1
1,415,595 + +0.8
1,415,595 + -0.2
1,415,595 + +2.0
1,415,596 - +0.1
1,415,596 - +0.6
1,415,599 + -0.4
1,415,672 + +1.7
1,415,722 - -0.1
1,415,775 + +0.5
1,415,781 + +0.9
1,415,783 + +0.4
1,415,813 + +0.3
1,415,830 + +0.3
1,415,830 + +0.2
1,416,032 + MCAODC_23435 0.81 +0.6
1,416,032 + MCAODC_23435 0.81 -0.1
1,416,033 - MCAODC_23435 0.81 -1.7
1,416,104 + +0.1
1,416,137 - +0.3
1,416,137 - +0.3
1,416,165 + -0.7
1,416,168 + +1.2
1,416,168 + -2.1
1,416,180 + -0.8
1,416,223 + MCAODC_23440 0.28 +0.4
1,416,223 + MCAODC_23440 0.28 +1.2
1,416,354 + +1.0
1,416,354 + +0.2
1,416,366 + +0.2
1,416,390 - -1.6
1,416,420 + +1.1
1,416,510 - MCAODC_23445 0.54 +1.0
1,416,563 - MCAODC_23445 0.82 -2.0
1,416,596 + -1.3
1,416,665 + +0.3
1,416,711 + -0.1
1,416,729 + +0.9
1,416,729 + -0.3
1,416,730 - +1.4
1,416,742 + +0.8
1,416,746 - -1.6
1,416,778 + -0.4
1,416,778 + +0.7
1,416,779 - -0.4
1,417,032 - MCAODC_23450 0.71 +0.5
1,417,067 + -1.1
1,417,071 - -0.1
1,417,078 + +0.5
1,417,079 - +1.4
1,417,081 - +0.3
1,417,127 - -2.1
1,417,127 - +0.6
1,417,198 - +1.2
1,417,352 + -0.4

Or see this region's nucleotide sequence