Strain Fitness in Escherichia coli ECRC101 around MCAODC_23385

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfhaC and tnp-IS3 are separated by 180 nucleotidestnp-IS3 and MCAODC_23385 overlap by 1 nucleotidesMCAODC_23385 and MCAODC_23390 are separated by 593 nucleotidesMCAODC_23390 and MCAODC_23395 are separated by 52 nucleotides MCAODC_23375: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,406,098 to 1,407,144 fhaC MCAODC_23380: tnp-IS3 - IS3 family transposase, at 1,407,325 to 1,407,651 tnp-IS3 MCAODC_23385: MCAODC_23385 - IS3 family transposase, at 1,407,651 to 1,408,538 _23385 MCAODC_23390: MCAODC_23390 - DUF4222 domain-containing protein, at 1,409,132 to 1,409,323 _23390 MCAODC_23395: MCAODC_23395 - Z1636-like protein, at 1,409,376 to 1,409,609 _23395 Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1406.669 kb on + strand, within fhaCat 1406.669 kb on + strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.680 kb on - strand, within fhaCat 1406.730 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.826 kb on + strand, within fhaCat 1406.827 kb on - strand, within fhaCat 1406.841 kb on + strand, within fhaCat 1406.842 kb on - strand, within fhaCat 1406.842 kb on - strand, within fhaCat 1406.944 kb on - strand, within fhaCat 1407.121 kb on + strandat 1407.121 kb on + strandat 1407.133 kb on + strandat 1407.245 kb on + strandat 1407.256 kb on + strandat 1407.257 kb on - strandat 1408.687 kb on + strandat 1408.688 kb on - strandat 1408.878 kb on - strandat 1409.049 kb on + strandat 1409.090 kb on + strandat 1409.106 kb on - strandat 1409.273 kb on + strand, within MCAODC_23390at 1409.274 kb on - strand, within MCAODC_23390at 1409.274 kb on - strand, within MCAODC_23390at 1409.358 kb on - strandat 1409.366 kb on - strandat 1409.366 kb on - strandat 1409.366 kb on - strandat 1409.378 kb on - strandat 1409.378 kb on - strandat 1409.461 kb on - strand, within MCAODC_23395at 1409.462 kb on + strand, within MCAODC_23395at 1409.533 kb on + strand, within MCAODC_23395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,406,669 + fhaC MCAODC_23375 0.55 +0.9
1,406,669 + fhaC MCAODC_23375 0.55 -1.1
1,406,670 - fhaC MCAODC_23375 0.55 -0.7
1,406,670 - fhaC MCAODC_23375 0.55 -0.4
1,406,670 - fhaC MCAODC_23375 0.55 +0.1
1,406,680 - fhaC MCAODC_23375 0.56 +0.8
1,406,730 + fhaC MCAODC_23375 0.60 +0.2
1,406,795 + fhaC MCAODC_23375 0.67 -1.4
1,406,795 + fhaC MCAODC_23375 0.67 +0.4
1,406,795 + fhaC MCAODC_23375 0.67 +0.6
1,406,795 + fhaC MCAODC_23375 0.67 -1.5
1,406,795 + fhaC MCAODC_23375 0.67 -1.0
1,406,796 - fhaC MCAODC_23375 0.67 -3.8
1,406,796 - fhaC MCAODC_23375 0.67 +0.6
1,406,796 - fhaC MCAODC_23375 0.67 -0.2
1,406,826 + fhaC MCAODC_23375 0.70 +0.3
1,406,827 - fhaC MCAODC_23375 0.70 +0.3
1,406,841 + fhaC MCAODC_23375 0.71 +1.3
1,406,842 - fhaC MCAODC_23375 0.71 +2.8
1,406,842 - fhaC MCAODC_23375 0.71 -1.9
1,406,944 - fhaC MCAODC_23375 0.81 -2.1
1,407,121 + -0.9
1,407,121 + -0.4
1,407,133 + +0.4
1,407,245 + -1.6
1,407,256 + +0.0
1,407,257 - -0.4
1,408,687 + -0.2
1,408,688 - +1.2
1,408,878 - +0.2
1,409,049 + -2.5
1,409,090 + +2.5
1,409,106 - +0.5
1,409,273 + MCAODC_23390 0.73 -0.8
1,409,274 - MCAODC_23390 0.74 -0.7
1,409,274 - MCAODC_23390 0.74 -0.6
1,409,358 - -1.2
1,409,366 - -1.1
1,409,366 - -0.3
1,409,366 - +0.7
1,409,378 - +0.7
1,409,378 - -1.6
1,409,461 - MCAODC_23395 0.36 -0.2
1,409,462 + MCAODC_23395 0.37 -0.0
1,409,533 + MCAODC_23395 0.67 +0.2

Or see this region's nucleotide sequence