Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides
MCAODC_23105: solA - N-methyl-L-tryptophan oxidase, at 1,360,752 to 1,361,870
solA
MCAODC_23110: yceO - Uncharacterized protein YceO, at 1,361,918 to 1,362,031
yceO
MCAODC_23115: yceJ - Cytochrome b561-like protein, at 1,362,292 to 1,362,858
yceJ
MCAODC_23120: yceI - YceI family protein, at 1,362,862 to 1,363,437
yceI
Position (kb) 1361
1362
1363 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1360.929 kb on + strand, within solA at 1361.006 kb on - strand, within solA at 1361.117 kb on + strand, within solA at 1361.154 kb on + strand, within solA at 1361.155 kb on - strand, within solA at 1361.155 kb on - strand, within solA at 1361.297 kb on - strand, within solA at 1361.300 kb on + strand, within solA at 1361.300 kb on + strand, within solA at 1361.301 kb on - strand, within solA at 1361.301 kb on - strand, within solA at 1361.362 kb on + strand, within solA at 1361.399 kb on - strand, within solA at 1361.402 kb on + strand, within solA at 1361.407 kb on + strand, within solA at 1361.408 kb on - strand, within solA at 1361.419 kb on - strand, within solA at 1361.437 kb on - strand, within solA at 1361.494 kb on - strand, within solA at 1361.497 kb on - strand, within solA at 1361.635 kb on + strand, within solA at 1361.684 kb on + strand, within solA at 1361.709 kb on - strand, within solA at 1361.735 kb on + strand, within solA at 1361.736 kb on - strand, within solA at 1361.913 kb on - strand at 1361.971 kb on - strand, within yceO at 1361.971 kb on - strand, within yceO at 1362.291 kb on + strand at 1362.291 kb on + strand at 1362.306 kb on + strand at 1362.327 kb on + strand at 1362.360 kb on + strand, within yceJ at 1362.360 kb on + strand, within yceJ at 1362.383 kb on + strand, within yceJ at 1362.409 kb on + strand, within yceJ at 1362.413 kb on - strand, within yceJ at 1362.447 kb on + strand, within yceJ at 1362.447 kb on + strand, within yceJ at 1362.447 kb on + strand, within yceJ at 1362.448 kb on - strand, within yceJ at 1362.506 kb on + strand, within yceJ at 1362.506 kb on + strand, within yceJ at 1362.583 kb on + strand, within yceJ at 1362.583 kb on + strand, within yceJ at 1362.616 kb on + strand, within yceJ at 1362.639 kb on + strand, within yceJ at 1362.749 kb on + strand, within yceJ at 1362.749 kb on + strand, within yceJ at 1362.750 kb on - strand, within yceJ at 1362.801 kb on + strand, within yceJ at 1362.847 kb on + strand at 1362.996 kb on + strand, within yceI at 1362.997 kb on - strand, within yceI at 1363.004 kb on + strand, within yceI at 1363.005 kb on - strand, within yceI at 1363.005 kb on - strand, within yceI at 1363.006 kb on + strand, within yceI at 1363.006 kb on + strand, within yceI
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,360,929 + solA MCAODC_23105 0.16 -4.8 1,361,006 - solA MCAODC_23105 0.23 -0.5 1,361,117 + solA MCAODC_23105 0.33 +0.1 1,361,154 + solA MCAODC_23105 0.36 +0.7 1,361,155 - solA MCAODC_23105 0.36 -0.9 1,361,155 - solA MCAODC_23105 0.36 -0.1 1,361,297 - solA MCAODC_23105 0.49 -0.9 1,361,300 + solA MCAODC_23105 0.49 +0.4 1,361,300 + solA MCAODC_23105 0.49 -0.2 1,361,301 - solA MCAODC_23105 0.49 -1.8 1,361,301 - solA MCAODC_23105 0.49 +0.6 1,361,362 + solA MCAODC_23105 0.55 -0.0 1,361,399 - solA MCAODC_23105 0.58 -1.4 1,361,402 + solA MCAODC_23105 0.58 +1.0 1,361,407 + solA MCAODC_23105 0.59 -0.8 1,361,408 - solA MCAODC_23105 0.59 +0.6 1,361,419 - solA MCAODC_23105 0.60 +2.5 1,361,437 - solA MCAODC_23105 0.61 +0.0 1,361,494 - solA MCAODC_23105 0.66 +0.1 1,361,497 - solA MCAODC_23105 0.67 -0.6 1,361,635 + solA MCAODC_23105 0.79 -0.3 1,361,684 + solA MCAODC_23105 0.83 -0.4 1,361,709 - solA MCAODC_23105 0.86 -2.4 1,361,735 + solA MCAODC_23105 0.88 +1.0 1,361,736 - solA MCAODC_23105 0.88 -0.3 1,361,913 - -1.3 1,361,971 - yceO MCAODC_23110 0.46 +1.6 1,361,971 - yceO MCAODC_23110 0.46 -0.7 1,362,291 + -0.3 1,362,291 + +0.5 1,362,306 + -0.5 1,362,327 + -1.3 1,362,360 + yceJ MCAODC_23115 0.12 -0.1 1,362,360 + yceJ MCAODC_23115 0.12 -1.6 1,362,383 + yceJ MCAODC_23115 0.16 -0.5 1,362,409 + yceJ MCAODC_23115 0.21 -0.0 1,362,413 - yceJ MCAODC_23115 0.21 +0.2 1,362,447 + yceJ MCAODC_23115 0.27 -1.8 1,362,447 + yceJ MCAODC_23115 0.27 +0.0 1,362,447 + yceJ MCAODC_23115 0.27 -1.9 1,362,448 - yceJ MCAODC_23115 0.28 +0.8 1,362,506 + yceJ MCAODC_23115 0.38 +0.3 1,362,506 + yceJ MCAODC_23115 0.38 -0.1 1,362,583 + yceJ MCAODC_23115 0.51 +0.6 1,362,583 + yceJ MCAODC_23115 0.51 -2.3 1,362,616 + yceJ MCAODC_23115 0.57 -0.3 1,362,639 + yceJ MCAODC_23115 0.61 +0.2 1,362,749 + yceJ MCAODC_23115 0.81 -0.1 1,362,749 + yceJ MCAODC_23115 0.81 +0.4 1,362,750 - yceJ MCAODC_23115 0.81 -0.1 1,362,801 + yceJ MCAODC_23115 0.90 -1.1 1,362,847 + +0.7 1,362,996 + yceI MCAODC_23120 0.23 +0.5 1,362,997 - yceI MCAODC_23120 0.23 -1.1 1,363,004 + yceI MCAODC_23120 0.25 -2.0 1,363,005 - yceI MCAODC_23120 0.25 -0.7 1,363,005 - yceI MCAODC_23120 0.25 -0.6 1,363,006 + yceI MCAODC_23120 0.25 +0.4 1,363,006 + yceI MCAODC_23120 0.25 +0.6
Or see this region's nucleotide sequence