Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgB and flgA are separated by 154 nucleotides flgA and flgM are separated by 75 nucleotides flgM and flgN are separated by 4 nucleotides flgN and murJ are separated by 39 nucleotides
MCAODC_23035: flgB - flagellar basal body rod protein FlgB, at 1,349,901 to 1,350,317
flgB
MCAODC_23040: flgA - flagellar basal body P-ring formation protein FlgA, at 1,350,472 to 1,351,131
flgA
MCAODC_23045: flgM - anti-sigma-28 factor FlgM, at 1,351,207 to 1,351,500
flgM
MCAODC_23050: flgN - flagella biosynthesis chaperone FlgN, at 1,351,505 to 1,351,921
flgN
MCAODC_23055: murJ - murein biosynthesis integral membrane protein MurJ, at 1,351,961 to 1,353,496
murJ
Position (kb) 1351
1352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1350.317 kb on + strand at 1350.317 kb on + strand at 1350.318 kb on - strand at 1350.355 kb on - strand at 1350.355 kb on - strand at 1350.405 kb on + strand at 1350.406 kb on - strand at 1350.406 kb on - strand at 1350.409 kb on + strand at 1350.410 kb on - strand at 1350.437 kb on + strand at 1350.451 kb on + strand at 1350.489 kb on + strand at 1350.587 kb on + strand, within flgA at 1350.588 kb on - strand, within flgA at 1350.615 kb on + strand, within flgA at 1350.615 kb on + strand, within flgA at 1350.629 kb on + strand, within flgA at 1350.629 kb on + strand, within flgA at 1350.630 kb on - strand, within flgA at 1350.630 kb on - strand, within flgA at 1350.669 kb on + strand, within flgA at 1350.669 kb on + strand, within flgA at 1350.727 kb on + strand, within flgA at 1350.728 kb on - strand, within flgA at 1350.731 kb on + strand, within flgA at 1350.841 kb on - strand, within flgA at 1350.905 kb on + strand, within flgA at 1351.082 kb on + strand at 1351.083 kb on - strand at 1351.120 kb on - strand at 1351.122 kb on - strand at 1351.165 kb on + strand at 1351.165 kb on + strand at 1351.179 kb on + strand at 1351.202 kb on - strand at 1351.212 kb on + strand at 1351.212 kb on + strand at 1351.241 kb on + strand, within flgM at 1351.494 kb on + strand at 1351.498 kb on + strand at 1351.504 kb on + strand at 1351.504 kb on + strand at 1351.594 kb on + strand, within flgN at 1351.761 kb on + strand, within flgN at 1351.780 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.862 kb on + strand, within flgN at 1351.962 kb on + strand at 1351.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,350,317 + +1.4 1,350,317 + +0.9 1,350,318 - +0.5 1,350,355 - +0.6 1,350,355 - +1.0 1,350,405 + +3.6 1,350,406 - -1.3 1,350,406 - +0.3 1,350,409 + -1.1 1,350,410 - -1.2 1,350,437 + -0.6 1,350,451 + +0.3 1,350,489 + -0.0 1,350,587 + flgA MCAODC_23040 0.17 -0.5 1,350,588 - flgA MCAODC_23040 0.18 +0.5 1,350,615 + flgA MCAODC_23040 0.22 -0.1 1,350,615 + flgA MCAODC_23040 0.22 +1.1 1,350,629 + flgA MCAODC_23040 0.24 +0.7 1,350,629 + flgA MCAODC_23040 0.24 +1.0 1,350,630 - flgA MCAODC_23040 0.24 -0.6 1,350,630 - flgA MCAODC_23040 0.24 -1.3 1,350,669 + flgA MCAODC_23040 0.30 +0.3 1,350,669 + flgA MCAODC_23040 0.30 +0.3 1,350,727 + flgA MCAODC_23040 0.39 +0.5 1,350,728 - flgA MCAODC_23040 0.39 +2.1 1,350,731 + flgA MCAODC_23040 0.39 -3.6 1,350,841 - flgA MCAODC_23040 0.56 +2.3 1,350,905 + flgA MCAODC_23040 0.66 +0.3 1,351,082 + -2.9 1,351,083 - -0.0 1,351,120 - -0.3 1,351,122 - -1.7 1,351,165 + +0.6 1,351,165 + +0.4 1,351,179 + -0.1 1,351,202 - +0.1 1,351,212 + +0.7 1,351,212 + +0.9 1,351,241 + flgM MCAODC_23045 0.12 +1.4 1,351,494 + -0.1 1,351,498 + -1.1 1,351,504 + -0.2 1,351,504 + -0.4 1,351,594 + flgN MCAODC_23050 0.21 -2.4 1,351,761 + flgN MCAODC_23050 0.61 -0.2 1,351,780 + flgN MCAODC_23050 0.66 -1.2 1,351,860 + flgN MCAODC_23050 0.85 +0.8 1,351,860 + flgN MCAODC_23050 0.85 +1.6 1,351,860 + flgN MCAODC_23050 0.85 +1.3 1,351,860 + flgN MCAODC_23050 0.85 +0.4 1,351,860 + flgN MCAODC_23050 0.85 -1.6 1,351,860 + flgN MCAODC_23050 0.85 -1.4 1,351,860 + flgN MCAODC_23050 0.85 -0.9 1,351,862 + flgN MCAODC_23050 0.86 -0.8 1,351,962 + -0.9 1,351,963 - +0.1
Or see this region's nucleotide sequence