Strain Fitness in Escherichia coli ECRC101 around MCAODC_22985

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrne and flgL are separated by 194 nucleotidesflgL and flgK are separated by 11 nucleotides MCAODC_22980: rne - ribonuclease E, at 1,337,006 to 1,340,191 rne MCAODC_22985: flgL - flagellar hook-associated protein FlgL, at 1,340,386 to 1,341,339 flgL MCAODC_22990: flgK - flagellar hook-associated protein FlgK, at 1,341,351 to 1,342,994 flgK Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1339.551 kb on + strand, within rneat 1339.551 kb on + strand, within rneat 1339.551 kb on + strand, within rneat 1339.566 kb on + strand, within rneat 1339.566 kb on + strand, within rneat 1339.693 kb on - strand, within rneat 1340.189 kb on + strandat 1340.192 kb on + strandat 1340.196 kb on + strandat 1340.258 kb on + strandat 1340.262 kb on - strandat 1340.354 kb on + strandat 1340.355 kb on - strandat 1340.370 kb on - strandat 1340.370 kb on - strandat 1340.388 kb on - strandat 1340.427 kb on + strandat 1340.436 kb on + strandat 1340.436 kb on + strandat 1340.439 kb on - strandat 1340.439 kb on - strandat 1340.439 kb on - strandat 1340.472 kb on - strandat 1340.482 kb on - strand, within flgLat 1340.482 kb on - strand, within flgLat 1340.534 kb on - strand, within flgLat 1340.552 kb on - strand, within flgLat 1340.552 kb on - strand, within flgLat 1340.552 kb on - strand, within flgLat 1340.552 kb on - strand, within flgLat 1340.650 kb on - strand, within flgLat 1340.650 kb on - strand, within flgLat 1340.790 kb on + strand, within flgLat 1340.791 kb on - strand, within flgLat 1340.793 kb on + strand, within flgLat 1340.794 kb on - strand, within flgLat 1340.825 kb on - strand, within flgLat 1340.883 kb on - strand, within flgLat 1340.925 kb on - strand, within flgLat 1341.099 kb on + strand, within flgLat 1341.104 kb on - strand, within flgLat 1341.104 kb on - strand, within flgLat 1341.104 kb on - strand, within flgLat 1341.264 kb on - strandat 1341.314 kb on + strandat 1341.528 kb on - strand, within flgKat 1341.720 kb on + strand, within flgKat 1341.721 kb on - strand, within flgKat 1341.721 kb on - strand, within flgKat 1341.747 kb on + strand, within flgKat 1341.858 kb on - strand, within flgKat 1341.891 kb on - strand, within flgKat 1341.891 kb on - strand, within flgKat 1341.891 kb on - strand, within flgKat 1341.943 kb on - strand, within flgKat 1342.107 kb on - strand, within flgKat 1342.229 kb on + strand, within flgKat 1342.320 kb on - strand, within flgKat 1342.320 kb on - strand, within flgKat 1342.320 kb on - strand, within flgKat 1342.322 kb on - strand, within flgKat 1342.322 kb on - strand, within flgKat 1342.322 kb on - strand, within flgKat 1342.322 kb on - strand, within flgKat 1342.322 kb on - strand, within flgK

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,339,551 + rne MCAODC_22980 0.80 -1.1
1,339,551 + rne MCAODC_22980 0.80 -1.9
1,339,551 + rne MCAODC_22980 0.80 -1.5
1,339,566 + rne MCAODC_22980 0.80 +0.5
1,339,566 + rne MCAODC_22980 0.80 -2.6
1,339,693 - rne MCAODC_22980 0.84 -3.0
1,340,189 + -0.7
1,340,192 + -1.6
1,340,196 + -0.2
1,340,258 + +0.3
1,340,262 - +0.2
1,340,354 + -0.6
1,340,355 - +0.7
1,340,370 - -1.2
1,340,370 - -0.3
1,340,388 - -2.3
1,340,427 + +0.0
1,340,436 + +0.7
1,340,436 + +2.1
1,340,439 - -0.9
1,340,439 - +0.7
1,340,439 - -0.9
1,340,472 - +1.1
1,340,482 - flgL MCAODC_22985 0.10 +0.4
1,340,482 - flgL MCAODC_22985 0.10 +0.7
1,340,534 - flgL MCAODC_22985 0.16 +1.2
1,340,552 - flgL MCAODC_22985 0.17 -2.2
1,340,552 - flgL MCAODC_22985 0.17 -1.3
1,340,552 - flgL MCAODC_22985 0.17 +0.4
1,340,552 - flgL MCAODC_22985 0.17 +0.4
1,340,650 - flgL MCAODC_22985 0.28 -0.6
1,340,650 - flgL MCAODC_22985 0.28 +0.6
1,340,790 + flgL MCAODC_22985 0.42 -1.3
1,340,791 - flgL MCAODC_22985 0.42 -0.1
1,340,793 + flgL MCAODC_22985 0.43 +1.2
1,340,794 - flgL MCAODC_22985 0.43 -0.9
1,340,825 - flgL MCAODC_22985 0.46 -0.9
1,340,883 - flgL MCAODC_22985 0.52 +0.4
1,340,925 - flgL MCAODC_22985 0.56 -0.3
1,341,099 + flgL MCAODC_22985 0.75 +0.4
1,341,104 - flgL MCAODC_22985 0.75 +0.6
1,341,104 - flgL MCAODC_22985 0.75 +0.3
1,341,104 - flgL MCAODC_22985 0.75 -1.9
1,341,264 - +1.4
1,341,314 + +0.9
1,341,528 - flgK MCAODC_22990 0.11 -2.0
1,341,720 + flgK MCAODC_22990 0.22 -1.6
1,341,721 - flgK MCAODC_22990 0.23 -1.8
1,341,721 - flgK MCAODC_22990 0.23 -0.7
1,341,747 + flgK MCAODC_22990 0.24 +0.8
1,341,858 - flgK MCAODC_22990 0.31 -1.1
1,341,891 - flgK MCAODC_22990 0.33 +1.1
1,341,891 - flgK MCAODC_22990 0.33 -1.2
1,341,891 - flgK MCAODC_22990 0.33 +1.3
1,341,943 - flgK MCAODC_22990 0.36 +0.4
1,342,107 - flgK MCAODC_22990 0.46 +1.1
1,342,229 + flgK MCAODC_22990 0.53 +0.9
1,342,320 - flgK MCAODC_22990 0.59 -1.4
1,342,320 - flgK MCAODC_22990 0.59 -0.4
1,342,320 - flgK MCAODC_22990 0.59 +0.4
1,342,322 - flgK MCAODC_22990 0.59 +1.4
1,342,322 - flgK MCAODC_22990 0.59 +1.4
1,342,322 - flgK MCAODC_22990 0.59 -2.8
1,342,322 - flgK MCAODC_22990 0.59 +0.4
1,342,322 - flgK MCAODC_22990 0.59 +1.3

Or see this region's nucleotide sequence