Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and hipB are separated by 173 nucleotides hipB and ompT are separated by 498 nucleotides
MCAODC_21975: tnp-IS3 - IS3 family transposase, at 1,176,080 to 1,176,967
tnp-IS3
MCAODC_21980: tnp-IS3 - IS3 family transposase, at 1,176,967 to 1,177,293
tnp-IS3
MCAODC_21985: hipB - transcriptional regulator, at 1,177,467 to 1,178,051
hipB
MCAODC_21990: ompT - omptin family outer membrane protease OmpT, at 1,178,550 to 1,179,503
ompT
Position (kb)
1177
1178
1179 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1177.359 kb on - strand at 1177.411 kb on - strand at 1177.420 kb on + strand at 1177.421 kb on - strand at 1177.421 kb on - strand at 1177.421 kb on - strand at 1177.421 kb on - strand at 1177.428 kb on + strand at 1177.429 kb on - strand at 1177.429 kb on - strand at 1177.429 kb on - strand at 1177.464 kb on - strand at 1177.498 kb on + strand at 1177.499 kb on - strand at 1177.499 kb on - strand at 1177.499 kb on - strand at 1177.499 kb on - strand at 1177.499 kb on - strand at 1177.499 kb on - strand at 1177.554 kb on - strand, within hipB at 1177.707 kb on + strand, within hipB at 1177.710 kb on + strand, within hipB at 1177.851 kb on - strand, within hipB at 1177.854 kb on - strand, within hipB at 1177.866 kb on - strand, within hipB at 1177.866 kb on - strand, within hipB at 1177.866 kb on - strand, within hipB at 1177.878 kb on - strand, within hipB at 1177.881 kb on + strand, within hipB at 1177.882 kb on - strand, within hipB at 1178.025 kb on + strand at 1178.117 kb on - strand at 1178.142 kb on + strand at 1178.149 kb on + strand at 1178.156 kb on - strand at 1178.156 kb on - strand at 1178.196 kb on + strand at 1178.210 kb on - strand at 1178.312 kb on - strand at 1178.317 kb on + strand at 1178.332 kb on - strand at 1178.393 kb on - strand at 1178.549 kb on + strand at 1178.698 kb on - strand, within ompT at 1178.800 kb on + strand, within ompT at 1178.800 kb on + strand, within ompT at 1178.918 kb on + strand, within ompT at 1178.931 kb on + strand, within ompT at 1179.026 kb on + strand, within ompT at 1179.026 kb on + strand, within ompT at 1179.026 kb on + strand, within ompT at 1179.032 kb on + strand, within ompT at 1179.051 kb on + strand, within ompT
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,177,359 - +2.7 1,177,411 - +0.1 1,177,420 + +0.0 1,177,421 - -2.3 1,177,421 - -2.5 1,177,421 - -0.3 1,177,421 - +0.5 1,177,428 + +1.3 1,177,429 - +0.2 1,177,429 - +0.2 1,177,429 - -0.8 1,177,464 - -0.1 1,177,498 + -1.2 1,177,499 - +0.5 1,177,499 - +0.2 1,177,499 - +0.1 1,177,499 - -1.9 1,177,499 - -0.1 1,177,499 - -0.0 1,177,554 - hipB MCAODC_21985 0.15 -0.7 1,177,707 + hipB MCAODC_21985 0.41 +0.7 1,177,710 + hipB MCAODC_21985 0.42 +0.0 1,177,851 - hipB MCAODC_21985 0.66 +0.4 1,177,854 - hipB MCAODC_21985 0.66 +1.4 1,177,866 - hipB MCAODC_21985 0.68 +1.0 1,177,866 - hipB MCAODC_21985 0.68 -0.5 1,177,866 - hipB MCAODC_21985 0.68 +0.6 1,177,878 - hipB MCAODC_21985 0.70 -0.5 1,177,881 + hipB MCAODC_21985 0.71 -1.4 1,177,882 - hipB MCAODC_21985 0.71 +0.3 1,178,025 + -1.3 1,178,117 - +1.0 1,178,142 + -1.7 1,178,149 + +0.9 1,178,156 - +0.4 1,178,156 - -3.5 1,178,196 + +0.6 1,178,210 - -1.5 1,178,312 - +0.7 1,178,317 + +0.9 1,178,332 - +0.3 1,178,393 - -0.1 1,178,549 + -0.0 1,178,698 - ompT MCAODC_21990 0.16 -2.5 1,178,800 + ompT MCAODC_21990 0.26 -0.0 1,178,800 + ompT MCAODC_21990 0.26 -1.0 1,178,918 + ompT MCAODC_21990 0.39 +0.4 1,178,931 + ompT MCAODC_21990 0.40 +0.1 1,179,026 + ompT MCAODC_21990 0.50 -0.4 1,179,026 + ompT MCAODC_21990 0.50 +0.7 1,179,026 + ompT MCAODC_21990 0.50 -1.4 1,179,032 + ompT MCAODC_21990 0.51 +0.2 1,179,051 + ompT MCAODC_21990 0.53 +1.9
Or see this region's nucleotide sequence