Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adhE and tdk are separated by 300 nucleotides tdk and hns are separated by 603 nucleotides
MCAODC_21655: adhE - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 1,113,690 to 1,116,365
adhE
MCAODC_21660: tdk - thymidine kinase, at 1,116,666 to 1,117,283
tdk
MCAODC_21665: hns - DNA-binding transcriptional regulator H-NS, at 1,117,887 to 1,118,300
hns
Position (kb)
1116
1117
1118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1115.673 kb on + strand, within adhE at 1115.673 kb on + strand, within adhE at 1115.674 kb on - strand, within adhE at 1115.851 kb on + strand, within adhE at 1115.851 kb on + strand, within adhE at 1115.851 kb on + strand, within adhE at 1115.852 kb on - strand, within adhE at 1115.852 kb on - strand, within adhE at 1115.852 kb on - strand, within adhE at 1115.927 kb on + strand, within adhE at 1116.059 kb on + strand, within adhE at 1116.068 kb on + strand, within adhE at 1116.131 kb on + strand at 1116.273 kb on + strand at 1116.288 kb on + strand at 1116.292 kb on + strand at 1116.292 kb on + strand at 1116.389 kb on - strand at 1116.481 kb on - strand at 1116.481 kb on - strand at 1116.507 kb on - strand at 1116.557 kb on - strand at 1116.557 kb on - strand at 1116.557 kb on - strand at 1116.589 kb on - strand at 1116.662 kb on - strand at 1116.665 kb on - strand at 1116.714 kb on + strand at 1116.837 kb on - strand, within tdk at 1116.909 kb on - strand, within tdk at 1116.952 kb on - strand, within tdk at 1116.994 kb on - strand, within tdk at 1116.994 kb on - strand, within tdk at 1116.994 kb on - strand, within tdk at 1117.081 kb on - strand, within tdk at 1117.126 kb on - strand, within tdk at 1117.180 kb on - strand, within tdk at 1117.213 kb on + strand, within tdk at 1117.214 kb on - strand, within tdk at 1117.235 kb on + strand at 1117.241 kb on + strand at 1117.271 kb on - strand at 1117.328 kb on + strand at 1117.361 kb on - strand at 1117.536 kb on + strand at 1117.539 kb on + strand at 1117.612 kb on - strand at 1117.615 kb on - strand at 1117.615 kb on - strand at 1117.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,115,673 + adhE MCAODC_21655 0.74 +2.1 1,115,673 + adhE MCAODC_21655 0.74 +0.3 1,115,674 - adhE MCAODC_21655 0.74 +1.3 1,115,851 + adhE MCAODC_21655 0.81 -2.2 1,115,851 + adhE MCAODC_21655 0.81 -1.0 1,115,851 + adhE MCAODC_21655 0.81 -2.3 1,115,852 - adhE MCAODC_21655 0.81 +0.9 1,115,852 - adhE MCAODC_21655 0.81 -1.9 1,115,852 - adhE MCAODC_21655 0.81 -2.8 1,115,927 + adhE MCAODC_21655 0.84 +0.2 1,116,059 + adhE MCAODC_21655 0.89 +0.0 1,116,068 + adhE MCAODC_21655 0.89 -1.1 1,116,131 + +1.1 1,116,273 + -1.3 1,116,288 + +0.1 1,116,292 + +1.2 1,116,292 + -1.0 1,116,389 - +1.6 1,116,481 - +1.7 1,116,481 - +0.4 1,116,507 - +0.2 1,116,557 - -2.1 1,116,557 - -0.2 1,116,557 - -0.4 1,116,589 - +0.2 1,116,662 - +0.8 1,116,665 - -3.3 1,116,714 + -1.6 1,116,837 - tdk MCAODC_21660 0.28 +0.8 1,116,909 - tdk MCAODC_21660 0.39 +0.6 1,116,952 - tdk MCAODC_21660 0.46 +0.5 1,116,994 - tdk MCAODC_21660 0.53 -0.6 1,116,994 - tdk MCAODC_21660 0.53 +0.6 1,116,994 - tdk MCAODC_21660 0.53 -0.4 1,117,081 - tdk MCAODC_21660 0.67 +2.6 1,117,126 - tdk MCAODC_21660 0.74 +1.8 1,117,180 - tdk MCAODC_21660 0.83 +0.8 1,117,213 + tdk MCAODC_21660 0.89 +0.4 1,117,214 - tdk MCAODC_21660 0.89 +0.3 1,117,235 + +0.6 1,117,241 + -0.4 1,117,271 - +0.8 1,117,328 + +0.9 1,117,361 - -0.0 1,117,536 + +0.9 1,117,539 + -2.2 1,117,612 - +0.1 1,117,615 - +2.3 1,117,615 - -0.0 1,117,803 - +0.3
Or see this region's nucleotide sequence