Strain Fitness in Escherichia coli ECRC101 around MCAODC_21465

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21460 and MCAODC_21465 are separated by 1 nucleotidesMCAODC_21465 and MCAODC_21470 are separated by 69 nucleotidesMCAODC_21470 and hokD1 are separated by 220 nucleotides MCAODC_21460: MCAODC_21460 - DUF968 domain-containing protein, at 1,084,427 to 1,085,473 _21460 MCAODC_21465: MCAODC_21465 - hypothetical protein, at 1,085,475 to 1,085,753 _21465 MCAODC_21470: MCAODC_21470 - Hypothetical rem protein, at 1,085,823 to 1,086,080 _21470 MCAODC_21475: hokD1 - Protein HokD, at 1,086,301 to 1,086,513 hokD1 Position (kb) 1085 1086Strain fitness (log2 ratio) -2 -1 0 1at 1084.832 kb on + strand, within MCAODC_21460at 1084.832 kb on + strand, within MCAODC_21460at 1084.860 kb on - strand, within MCAODC_21460at 1084.991 kb on + strand, within MCAODC_21460at 1085.016 kb on - strand, within MCAODC_21460at 1085.419 kb on + strandat 1085.463 kb on - strandat 1085.463 kb on - strandat 1085.594 kb on - strand, within MCAODC_21465at 1085.594 kb on - strand, within MCAODC_21465at 1085.812 kb on - strandat 1085.947 kb on - strand, within MCAODC_21470at 1085.987 kb on + strand, within MCAODC_21470at 1085.990 kb on + strand, within MCAODC_21470at 1086.033 kb on - strand, within MCAODC_21470at 1086.033 kb on - strand, within MCAODC_21470at 1086.103 kb on + strandat 1086.456 kb on + strand, within hokD1at 1086.498 kb on + strandat 1086.498 kb on + strandat 1086.499 kb on - strandat 1086.499 kb on - strandat 1086.499 kb on - strandat 1086.513 kb on + strandat 1086.515 kb on + strandat 1086.515 kb on + strandat 1086.515 kb on + strandat 1086.515 kb on + strandat 1086.536 kb on + strandat 1086.554 kb on - strandat 1086.554 kb on - strandat 1086.589 kb on + strandat 1086.614 kb on + strandat 1086.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,084,832 + MCAODC_21460 0.39 +0.5
1,084,832 + MCAODC_21460 0.39 +0.9
1,084,860 - MCAODC_21460 0.41 +1.0
1,084,991 + MCAODC_21460 0.54 -0.3
1,085,016 - MCAODC_21460 0.56 -0.4
1,085,419 + +1.4
1,085,463 - -0.4
1,085,463 - -0.2
1,085,594 - MCAODC_21465 0.43 -1.6
1,085,594 - MCAODC_21465 0.43 -1.8
1,085,812 - -0.4
1,085,947 - MCAODC_21470 0.48 +0.5
1,085,987 + MCAODC_21470 0.64 -1.5
1,085,990 + MCAODC_21470 0.65 +1.1
1,086,033 - MCAODC_21470 0.81 +1.7
1,086,033 - MCAODC_21470 0.81 +0.1
1,086,103 + +0.1
1,086,456 + hokD1 MCAODC_21475 0.73 +0.3
1,086,498 + -0.4
1,086,498 + -0.3
1,086,499 - -0.5
1,086,499 - -0.2
1,086,499 - -0.4
1,086,513 + +0.5
1,086,515 + +0.2
1,086,515 + -1.1
1,086,515 + -1.2
1,086,515 + +0.5
1,086,536 + -0.7
1,086,554 - -1.2
1,086,554 - -1.7
1,086,589 + +1.7
1,086,614 + -0.6
1,086,631 - +0.3

Or see this region's nucleotide sequence