Strain Fitness in Escherichia coli ECRC101 around MCAODC_18410

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttcyP and ydjO are separated by 50 nucleotidesydjO and cedA are separated by 288 nucleotidescedA and katE are separated by 182 nucleotides MCAODC_18405: tcyP - cystine/sulfocysteine:cation symporter, at 539,916 to 541,307 tcyP MCAODC_18410: ydjO - Uncharacterized protein YdjO, at 541,358 to 542,113 ydjO MCAODC_18415: cedA - cell division activator CedA, at 542,402 to 542,665 cedA MCAODC_18420: katE - catalase HPII, at 542,848 to 545,109 katE Position (kb) 541 542 543Strain fitness (log2 ratio) -2 -1 0 1 2at 540.371 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.375 kb on + strand, within tcyPat 540.376 kb on - strand, within tcyPat 540.383 kb on + strand, within tcyPat 540.511 kb on + strand, within tcyPat 540.601 kb on + strand, within tcyPat 540.601 kb on + strand, within tcyPat 540.671 kb on + strand, within tcyPat 540.802 kb on + strand, within tcyPat 540.803 kb on - strand, within tcyPat 540.995 kb on + strand, within tcyPat 541.305 kb on + strandat 541.305 kb on + strandat 541.511 kb on - strand, within ydjOat 541.526 kb on - strand, within ydjOat 541.677 kb on + strand, within ydjOat 542.293 kb on + strandat 542.393 kb on - strandat 542.393 kb on - strandat 542.505 kb on - strand, within cedAat 542.518 kb on - strand, within cedAat 542.601 kb on + strand, within cedAat 542.601 kb on + strand, within cedAat 542.602 kb on - strand, within cedAat 542.605 kb on + strand, within cedAat 542.606 kb on - strand, within cedAat 542.609 kb on - strand, within cedAat 542.669 kb on - strandat 542.686 kb on + strandat 542.782 kb on + strandat 542.827 kb on + strandat 543.043 kb on - strandat 543.060 kb on - strandat 543.094 kb on - strand, within katE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
540,371 + tcyP MCAODC_18405 0.33 -2.1
540,375 + tcyP MCAODC_18405 0.33 +1.8
540,375 + tcyP MCAODC_18405 0.33 +0.4
540,375 + tcyP MCAODC_18405 0.33 -1.2
540,375 + tcyP MCAODC_18405 0.33 +2.1
540,375 + tcyP MCAODC_18405 0.33 -0.8
540,375 + tcyP MCAODC_18405 0.33 +1.2
540,376 - tcyP MCAODC_18405 0.33 +0.8
540,383 + tcyP MCAODC_18405 0.34 -0.3
540,511 + tcyP MCAODC_18405 0.43 -2.2
540,601 + tcyP MCAODC_18405 0.49 +0.6
540,601 + tcyP MCAODC_18405 0.49 -0.1
540,671 + tcyP MCAODC_18405 0.54 +0.6
540,802 + tcyP MCAODC_18405 0.64 +0.7
540,803 - tcyP MCAODC_18405 0.64 -1.2
540,995 + tcyP MCAODC_18405 0.78 +0.1
541,305 + -0.1
541,305 + -0.8
541,511 - ydjO MCAODC_18410 0.20 -0.8
541,526 - ydjO MCAODC_18410 0.22 +0.3
541,677 + ydjO MCAODC_18410 0.42 +0.8
542,293 + +0.2
542,393 - -0.1
542,393 - -0.1
542,505 - cedA MCAODC_18415 0.39 +0.2
542,518 - cedA MCAODC_18415 0.44 -1.7
542,601 + cedA MCAODC_18415 0.75 -0.7
542,601 + cedA MCAODC_18415 0.75 +0.2
542,602 - cedA MCAODC_18415 0.76 -0.7
542,605 + cedA MCAODC_18415 0.77 -1.5
542,606 - cedA MCAODC_18415 0.77 -0.3
542,609 - cedA MCAODC_18415 0.78 -0.3
542,669 - -0.6
542,686 + +0.9
542,782 + -2.0
542,827 + +0.1
543,043 - +0.3
543,060 - -0.4
543,094 - katE MCAODC_18420 0.11 -1.2

Or see this region's nucleotide sequence