Strain Fitness in Escherichia coli ECRC101 around MCAODC_17890

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxE and nth overlap by 1 nucleotidesnth and MCAODC_17890 are separated by 127 nucleotidesMCAODC_17890 and dtpA are separated by 282 nucleotides MCAODC_17880: rsxE - electron transport complex subunit RsxE, at 439,824 to 440,519 rsxE MCAODC_17885: nth - endonuclease III, at 440,519 to 441,154 nth MCAODC_17890: MCAODC_17890 - hypothetical protein, at 441,282 to 441,482 _17890 MCAODC_17895: dtpA - dipeptide/tripeptide permease DtpA, at 441,765 to 443,267 dtpA Position (kb) 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 440.317 kb on + strand, within rsxEat 440.317 kb on + strand, within rsxEat 440.317 kb on + strand, within rsxEat 440.335 kb on + strand, within rsxEat 440.625 kb on + strand, within nthat 440.659 kb on + strand, within nthat 440.765 kb on - strand, within nthat 440.782 kb on + strand, within nthat 440.895 kb on + strand, within nthat 440.953 kb on + strand, within nthat 441.073 kb on + strand, within nthat 441.110 kb on - strandat 441.131 kb on + strandat 441.198 kb on - strandat 441.259 kb on - strandat 441.663 kb on - strandat 441.684 kb on + strandat 441.684 kb on + strandat 441.714 kb on + strandat 441.834 kb on + strandat 441.835 kb on - strandat 441.893 kb on + strandat 442.003 kb on + strand, within dtpAat 442.025 kb on + strand, within dtpAat 442.037 kb on + strand, within dtpAat 442.069 kb on - strand, within dtpAat 442.110 kb on + strand, within dtpAat 442.185 kb on + strand, within dtpAat 442.227 kb on + strand, within dtpAat 442.227 kb on + strand, within dtpAat 442.227 kb on + strand, within dtpAat 442.228 kb on - strand, within dtpAat 442.231 kb on - strand, within dtpAat 442.349 kb on + strand, within dtpAat 442.417 kb on - strand, within dtpAat 442.439 kb on + strand, within dtpA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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440,317 + rsxE MCAODC_17880 0.71 +0.3
440,317 + rsxE MCAODC_17880 0.71 -0.5
440,317 + rsxE MCAODC_17880 0.71 -1.0
440,335 + rsxE MCAODC_17880 0.73 -1.9
440,625 + nth MCAODC_17885 0.17 +1.3
440,659 + nth MCAODC_17885 0.22 -0.5
440,765 - nth MCAODC_17885 0.39 +0.5
440,782 + nth MCAODC_17885 0.41 -1.6
440,895 + nth MCAODC_17885 0.59 -2.0
440,953 + nth MCAODC_17885 0.68 -2.2
441,073 + nth MCAODC_17885 0.87 -0.3
441,110 - -1.7
441,131 + +1.9
441,198 - +0.2
441,259 - +1.8
441,663 - +0.0
441,684 + -0.7
441,684 + +0.2
441,714 + +1.7
441,834 + +0.7
441,835 - -0.1
441,893 + -1.7
442,003 + dtpA MCAODC_17895 0.16 +1.4
442,025 + dtpA MCAODC_17895 0.17 +0.8
442,037 + dtpA MCAODC_17895 0.18 +0.5
442,069 - dtpA MCAODC_17895 0.20 +0.4
442,110 + dtpA MCAODC_17895 0.23 +0.2
442,185 + dtpA MCAODC_17895 0.28 -0.7
442,227 + dtpA MCAODC_17895 0.31 -0.3
442,227 + dtpA MCAODC_17895 0.31 +0.1
442,227 + dtpA MCAODC_17895 0.31 +1.1
442,228 - dtpA MCAODC_17895 0.31 +0.4
442,231 - dtpA MCAODC_17895 0.31 +0.7
442,349 + dtpA MCAODC_17895 0.39 +1.7
442,417 - dtpA MCAODC_17895 0.43 -0.9
442,439 + dtpA MCAODC_17895 0.45 +0.2

Or see this region's nucleotide sequence