Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgJ and blr are separated by 242 nucleotides blr and ydgT are separated by 272 nucleotides ydgT and ydgK are separated by 85 nucleotides ydgK and rsxA are separated by 76 nucleotides rsxA and rsxB overlap by 1 nucleotides
MCAODC_17835: ydgJ - Uncharacterized oxidoreductase YdgJ, at 432,168 to 433,208
ydgJ
MCAODC_17840: blr - division septum protein Blr, at 433,451 to 433,576
blr
MCAODC_17845: ydgT - transcription modulator YdgT, at 433,849 to 434,064
ydgT
MCAODC_17850: ydgK - Inner membrane protein YdgK, at 434,150 to 434,590
ydgK
MCAODC_17855: rsxA - electron transport complex subunit RsxA, at 434,667 to 435,248
rsxA
MCAODC_17860: rsxB - electron transport complex subunit RsxB, at 435,248 to 435,826
rsxB
Position (kb) 434
435 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 433.230 kb on - strand at 433.230 kb on - strand at 433.230 kb on - strand at 433.239 kb on - strand at 433.249 kb on - strand at 433.309 kb on + strand at 433.310 kb on - strand at 433.387 kb on - strand at 433.395 kb on + strand at 433.395 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.558 kb on + strand, within blr at 433.559 kb on - strand, within blr at 433.654 kb on + strand at 433.763 kb on - strand at 433.804 kb on + strand at 433.828 kb on + strand at 433.832 kb on + strand at 433.864 kb on + strand at 433.868 kb on + strand at 433.915 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.927 kb on - strand, within ydgT at 433.962 kb on + strand, within ydgT at 433.963 kb on - strand, within ydgT at 433.966 kb on + strand, within ydgT at 433.966 kb on + strand, within ydgT at 434.054 kb on - strand at 434.083 kb on - strand at 434.094 kb on - strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.096 kb on - strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.150 kb on - strand at 434.227 kb on + strand, within ydgK at 434.250 kb on - strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.417 kb on + strand, within ydgK at 434.418 kb on - strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.419 kb on + strand, within ydgK at 434.420 kb on - strand, within ydgK at 434.434 kb on + strand, within ydgK at 434.490 kb on + strand, within ydgK at 434.588 kb on + strand at 434.597 kb on + strand at 434.598 kb on - strand at 434.603 kb on + strand at 434.701 kb on + strand at 434.964 kb on + strand, within rsxA at 434.993 kb on + strand, within rsxA at 435.187 kb on + strand, within rsxA at 435.203 kb on + strand at 435.204 kb on - strand at 435.256 kb on + strand at 435.446 kb on - strand, within rsxB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 433,230 - +2.7 433,230 - +0.9 433,230 - +0.4 433,239 - -0.2 433,249 - +0.5 433,309 + -0.4 433,310 - +0.9 433,387 - -0.2 433,395 + -0.1 433,395 + -2.1 433,449 + +0.2 433,449 + +0.8 433,449 + -0.5 433,449 + +0.2 433,558 + blr MCAODC_17840 0.85 -0.7 433,559 - blr MCAODC_17840 0.86 -1.8 433,654 + -0.6 433,763 - -0.5 433,804 + -2.0 433,828 + +0.5 433,832 + -0.4 433,864 + -1.1 433,868 + +0.8 433,915 + ydgT MCAODC_17845 0.31 +1.4 433,926 + ydgT MCAODC_17845 0.36 -0.3 433,926 + ydgT MCAODC_17845 0.36 +1.4 433,927 - ydgT MCAODC_17845 0.36 -0.6 433,962 + ydgT MCAODC_17845 0.52 -0.2 433,963 - ydgT MCAODC_17845 0.53 -1.8 433,966 + ydgT MCAODC_17845 0.54 -1.8 433,966 + ydgT MCAODC_17845 0.54 -0.0 434,054 - +0.9 434,083 - +0.1 434,094 - -1.3 434,095 + -1.3 434,095 + -0.4 434,095 + -3.0 434,095 + -1.8 434,095 + +0.3 434,096 - -0.9 434,149 + -1.4 434,149 + -2.0 434,149 + +1.2 434,149 + -1.7 434,149 + -0.1 434,149 + +1.2 434,149 + -0.8 434,150 - -0.1 434,227 + ydgK MCAODC_17850 0.17 +1.3 434,250 - ydgK MCAODC_17850 0.23 +0.4 434,417 + ydgK MCAODC_17850 0.61 -0.3 434,417 + ydgK MCAODC_17850 0.61 -1.0 434,417 + ydgK MCAODC_17850 0.61 +1.6 434,417 + ydgK MCAODC_17850 0.61 -0.9 434,418 - ydgK MCAODC_17850 0.61 +2.0 434,419 + ydgK MCAODC_17850 0.61 +1.2 434,419 + ydgK MCAODC_17850 0.61 +0.3 434,419 + ydgK MCAODC_17850 0.61 -0.7 434,419 + ydgK MCAODC_17850 0.61 +0.1 434,420 - ydgK MCAODC_17850 0.61 -0.1 434,434 + ydgK MCAODC_17850 0.64 -0.0 434,490 + ydgK MCAODC_17850 0.77 +0.4 434,588 + +1.1 434,597 + -0.4 434,598 - +0.9 434,603 + +0.3 434,701 + +0.4 434,964 + rsxA MCAODC_17855 0.51 +1.5 434,993 + rsxA MCAODC_17855 0.56 -0.2 435,187 + rsxA MCAODC_17855 0.89 -1.9 435,203 + -0.1 435,204 - -0.5 435,256 + -4.1 435,446 - rsxB MCAODC_17860 0.34 +0.1
Or see this region's nucleotide sequence