Strain Fitness in Escherichia coli ECRC101 around MCAODC_16020

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntynaI and ynaJ are separated by 243 nucleotidesynaJ and uspE are separated by 49 nucleotides MCAODC_16015: ynaI - low conductance mechanosensitive channel YnaI, at 94,237 to 95,268 ynaI MCAODC_16020: ynaJ - Uncharacterized protein YnaJ, at 95,512 to 95,769 ynaJ MCAODC_16025: uspE - universal stress protein UspE, at 95,819 to 96,769 uspE Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3at 94.622 kb on - strand, within ynaIat 94.626 kb on - strand, within ynaIat 94.626 kb on - strand, within ynaIat 95.081 kb on + strand, within ynaIat 95.506 kb on + strandat 95.506 kb on + strandat 95.506 kb on + strandat 95.506 kb on + strandat 95.517 kb on + strandat 95.624 kb on + strand, within ynaJat 95.624 kb on + strand, within ynaJat 95.668 kb on + strand, within ynaJat 95.700 kb on + strand, within ynaJat 95.700 kb on + strand, within ynaJat 95.700 kb on + strand, within ynaJat 95.767 kb on + strandat 95.807 kb on - strandat 95.859 kb on + strandat 95.860 kb on - strandat 95.987 kb on + strand, within uspEat 95.988 kb on - strand, within uspEat 96.119 kb on - strand, within uspEat 96.121 kb on - strand, within uspEat 96.263 kb on - strand, within uspEat 96.263 kb on - strand, within uspEat 96.308 kb on - strand, within uspEat 96.760 kb on - strandat 96.764 kb on - strandat 96.769 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
94,622 - ynaI MCAODC_16015 0.37 -0.1
94,626 - ynaI MCAODC_16015 0.38 -0.4
94,626 - ynaI MCAODC_16015 0.38 +3.1
95,081 + ynaI MCAODC_16015 0.82 -1.4
95,506 + -0.1
95,506 + -0.5
95,506 + +0.3
95,506 + +1.3
95,517 + -1.6
95,624 + ynaJ MCAODC_16020 0.43 -0.6
95,624 + ynaJ MCAODC_16020 0.43 +0.4
95,668 + ynaJ MCAODC_16020 0.60 +0.4
95,700 + ynaJ MCAODC_16020 0.73 -0.2
95,700 + ynaJ MCAODC_16020 0.73 -0.4
95,700 + ynaJ MCAODC_16020 0.73 -2.4
95,767 + -0.0
95,807 - +0.8
95,859 + +0.8
95,860 - -0.7
95,987 + uspE MCAODC_16025 0.18 -0.5
95,988 - uspE MCAODC_16025 0.18 +0.8
96,119 - uspE MCAODC_16025 0.32 +1.4
96,121 - uspE MCAODC_16025 0.32 +0.6
96,263 - uspE MCAODC_16025 0.47 +0.3
96,263 - uspE MCAODC_16025 0.47 +1.7
96,308 - uspE MCAODC_16025 0.51 +0.7
96,760 - +0.9
96,764 - -1.5
96,769 + -0.3

Or see this region's nucleotide sequence