Strain Fitness in Escherichia coli ECRC101 around MCAODC_14125

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglpQ and MCAODC_14125 are separated by 223 nucleotidesMCAODC_14125 and MCAODC_14130 are separated by 178 nucleotidesMCAODC_14130 and lysR are separated by 153 nucleotides MCAODC_14120: glpQ - glycerophosphodiester phosphodiesterase, at 2,767,337 to 2,768,413 glpQ MCAODC_14125: MCAODC_14125 - hypothetical protein, at 2,768,637 to 2,769,707 _14125 MCAODC_14130: MCAODC_14130 - hypothetical protein, at 2,769,886 to 2,770,017 _14130 MCAODC_14135: lysR - transcriptional regulator, at 2,770,171 to 2,771,049 lysR Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2767.640 kb on + strand, within glpQat 2767.643 kb on + strand, within glpQat 2767.730 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.753 kb on + strand, within glpQat 2767.837 kb on + strand, within glpQat 2767.837 kb on + strand, within glpQat 2767.841 kb on + strand, within glpQat 2767.841 kb on + strand, within glpQat 2767.842 kb on - strand, within glpQat 2767.842 kb on - strand, within glpQat 2767.922 kb on + strand, within glpQat 2767.923 kb on - strand, within glpQat 2767.923 kb on - strand, within glpQat 2767.988 kb on - strand, within glpQat 2768.034 kb on + strand, within glpQat 2768.048 kb on + strand, within glpQat 2768.108 kb on + strand, within glpQat 2768.182 kb on + strand, within glpQat 2768.263 kb on - strand, within glpQat 2768.274 kb on - strand, within glpQat 2768.325 kb on + strandat 2768.325 kb on + strandat 2768.327 kb on + strandat 2768.328 kb on - strandat 2768.355 kb on + strandat 2768.465 kb on - strandat 2768.594 kb on - strandat 2768.683 kb on - strandat 2769.534 kb on + strand, within MCAODC_14125at 2769.534 kb on + strand, within MCAODC_14125at 2769.672 kb on - strandat 2769.740 kb on - strandat 2769.847 kb on - strandat 2769.867 kb on + strandat 2769.884 kb on + strandat 2770.088 kb on + strandat 2770.089 kb on - strandat 2770.100 kb on + strandat 2770.112 kb on + strandat 2770.113 kb on - strandat 2770.113 kb on - strandat 2770.118 kb on + strandat 2770.118 kb on + strandat 2770.118 kb on + strandat 2770.119 kb on - strandat 2770.192 kb on + strandat 2770.192 kb on + strandat 2770.513 kb on - strand, within lysRat 2770.586 kb on + strand, within lysRat 2770.587 kb on - strand, within lysR

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,767,640 + glpQ MCAODC_14120 0.28 +0.2
2,767,643 + glpQ MCAODC_14120 0.28 +0.9
2,767,730 + glpQ MCAODC_14120 0.36 -0.3
2,767,753 + glpQ MCAODC_14120 0.39 +0.5
2,767,753 + glpQ MCAODC_14120 0.39 -0.8
2,767,753 + glpQ MCAODC_14120 0.39 -1.2
2,767,753 + glpQ MCAODC_14120 0.39 -0.2
2,767,837 + glpQ MCAODC_14120 0.46 +0.2
2,767,837 + glpQ MCAODC_14120 0.46 +0.7
2,767,841 + glpQ MCAODC_14120 0.47 +2.2
2,767,841 + glpQ MCAODC_14120 0.47 +1.9
2,767,842 - glpQ MCAODC_14120 0.47 -0.6
2,767,842 - glpQ MCAODC_14120 0.47 +2.4
2,767,922 + glpQ MCAODC_14120 0.54 +0.0
2,767,923 - glpQ MCAODC_14120 0.54 -0.3
2,767,923 - glpQ MCAODC_14120 0.54 -1.6
2,767,988 - glpQ MCAODC_14120 0.60 +0.5
2,768,034 + glpQ MCAODC_14120 0.65 -1.0
2,768,048 + glpQ MCAODC_14120 0.66 +0.1
2,768,108 + glpQ MCAODC_14120 0.72 -1.0
2,768,182 + glpQ MCAODC_14120 0.78 -1.0
2,768,263 - glpQ MCAODC_14120 0.86 -0.5
2,768,274 - glpQ MCAODC_14120 0.87 +0.3
2,768,325 + +0.0
2,768,325 + +0.4
2,768,327 + -3.0
2,768,328 - +2.7
2,768,355 + +0.2
2,768,465 - -0.6
2,768,594 - -0.8
2,768,683 - +0.7
2,769,534 + MCAODC_14125 0.84 +0.3
2,769,534 + MCAODC_14125 0.84 -0.1
2,769,672 - +0.9
2,769,740 - -0.4
2,769,847 - -2.3
2,769,867 + +0.9
2,769,884 + -0.2
2,770,088 + +0.2
2,770,089 - -2.4
2,770,100 + -1.2
2,770,112 + -3.3
2,770,113 - +0.9
2,770,113 - -0.1
2,770,118 + +0.5
2,770,118 + +1.2
2,770,118 + +1.1
2,770,119 - +0.4
2,770,192 + +0.3
2,770,192 + +0.6
2,770,513 - lysR MCAODC_14135 0.39 +0.3
2,770,586 + lysR MCAODC_14135 0.47 -0.5
2,770,587 - lysR MCAODC_14135 0.47 -2.5

Or see this region's nucleotide sequence