Strain Fitness in Escherichia coli ECRC101 around MCAODC_10030

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpepP and ubiH overlap by 4 nucleotidesubiH and ubiI are separated by 23 nucleotides MCAODC_10025: pepP - Xaa-Pro aminopeptidase, at 1,992,828 to 1,994,153 pepP MCAODC_10030: ubiH - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,994,150 to 1,995,328 ubiH MCAODC_10035: ubiI - FAD-dependent 2-octaprenylphenol hydroxylase, at 1,995,352 to 1,996,554 ubiI Position (kb) 1994 1995 1996Strain fitness (log2 ratio) -2 -1 0 1 2at 1993.212 kb on + strand, within pepPat 1993.212 kb on + strand, within pepPat 1993.236 kb on + strand, within pepPat 1993.415 kb on + strand, within pepPat 1993.517 kb on + strand, within pepPat 1993.528 kb on + strand, within pepPat 1993.528 kb on + strand, within pepPat 1993.560 kb on + strand, within pepPat 1993.560 kb on + strand, within pepPat 1993.560 kb on + strand, within pepPat 1993.698 kb on + strand, within pepPat 1993.698 kb on + strand, within pepPat 1993.740 kb on + strand, within pepPat 1993.790 kb on + strand, within pepPat 1993.790 kb on + strand, within pepPat 1993.807 kb on + strand, within pepPat 1993.832 kb on + strand, within pepPat 1993.874 kb on + strand, within pepPat 1993.989 kb on + strand, within pepPat 1993.989 kb on + strand, within pepPat 1993.989 kb on + strand, within pepPat 1993.989 kb on + strand, within pepPat 1993.989 kb on + strand, within pepPat 1994.042 kb on + strandat 1995.339 kb on + strandat 1995.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,993,212 + pepP MCAODC_10025 0.29 -2.0
1,993,212 + pepP MCAODC_10025 0.29 +1.6
1,993,236 + pepP MCAODC_10025 0.31 +0.3
1,993,415 + pepP MCAODC_10025 0.44 -0.7
1,993,517 + pepP MCAODC_10025 0.52 +0.4
1,993,528 + pepP MCAODC_10025 0.53 +1.8
1,993,528 + pepP MCAODC_10025 0.53 -0.3
1,993,560 + pepP MCAODC_10025 0.55 +0.1
1,993,560 + pepP MCAODC_10025 0.55 +0.9
1,993,560 + pepP MCAODC_10025 0.55 -0.6
1,993,698 + pepP MCAODC_10025 0.66 +0.1
1,993,698 + pepP MCAODC_10025 0.66 -0.1
1,993,740 + pepP MCAODC_10025 0.69 +1.7
1,993,790 + pepP MCAODC_10025 0.73 +0.9
1,993,790 + pepP MCAODC_10025 0.73 -0.2
1,993,807 + pepP MCAODC_10025 0.74 +0.6
1,993,832 + pepP MCAODC_10025 0.76 -0.6
1,993,874 + pepP MCAODC_10025 0.79 +0.2
1,993,989 + pepP MCAODC_10025 0.88 -0.3
1,993,989 + pepP MCAODC_10025 0.88 -0.2
1,993,989 + pepP MCAODC_10025 0.88 -1.1
1,993,989 + pepP MCAODC_10025 0.88 -0.7
1,993,989 + pepP MCAODC_10025 0.88 +0.3
1,994,042 + +1.4
1,995,339 + -0.4
1,995,340 - +0.2

Or see this region's nucleotide sequence