Strain Fitness in Escherichia coli ECRC101 around MCAODC_08255

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmreC and mreD overlap by 1 nucleotidesmreD and yhdE are separated by 8 nucleotidesyhdE and rng overlap by 11 nucleotides MCAODC_08250: mreC - rod shape-determining protein MreC, at 1,651,257 to 1,652,360 mreC MCAODC_08255: mreD - rod shape-determining protein MreD, at 1,652,360 to 1,652,848 mreD MCAODC_08260: yhdE - nucleoside triphosphate pyrophosphatase YhdE, at 1,652,857 to 1,653,450 yhdE MCAODC_08265: rng - ribonuclease G, at 1,653,440 to 1,654,909 rng Position (kb) 1652 1653Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1652.846 kb on + strandat 1652.846 kb on + strandat 1652.846 kb on + strandat 1652.856 kb on + strandat 1652.857 kb on - strandat 1652.857 kb on - strandat 1652.870 kb on - strandat 1652.870 kb on - strandat 1652.873 kb on + strandat 1652.873 kb on + strandat 1652.874 kb on - strandat 1652.903 kb on + strandat 1652.904 kb on - strandat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.934 kb on + strand, within yhdEat 1652.940 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.986 kb on + strand, within yhdEat 1652.987 kb on - strand, within yhdEat 1652.987 kb on - strand, within yhdEat 1653.070 kb on - strand, within yhdEat 1653.070 kb on - strand, within yhdEat 1653.144 kb on - strand, within yhdEat 1653.291 kb on + strand, within yhdEat 1653.292 kb on - strand, within yhdEat 1653.304 kb on + strand, within yhdEat 1653.305 kb on - strand, within yhdEat 1653.310 kb on - strand, within yhdEat 1653.345 kb on - strand, within yhdEat 1653.355 kb on + strand, within yhdEat 1653.355 kb on + strand, within yhdEat 1653.356 kb on - strand, within yhdEat 1653.356 kb on - strand, within yhdEat 1653.391 kb on + strandat 1653.398 kb on + strandat 1653.399 kb on - strandat 1653.399 kb on - strandat 1653.457 kb on - strandat 1653.466 kb on - strandat 1653.491 kb on + strandat 1653.491 kb on + strandat 1653.491 kb on + strandat 1653.493 kb on + strandat 1653.549 kb on + strandat 1653.553 kb on - strandat 1653.560 kb on - strandat 1653.563 kb on + strandat 1653.563 kb on + strandat 1653.564 kb on - strandat 1653.576 kb on + strandat 1653.576 kb on + strandat 1653.585 kb on + strandat 1653.612 kb on + strand, within rngat 1653.616 kb on + strand, within rngat 1653.617 kb on - strand, within rng

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,652,846 + -1.4
1,652,846 + +0.0
1,652,846 + +0.9
1,652,856 + +0.1
1,652,857 - -0.1
1,652,857 - +0.9
1,652,870 - +0.8
1,652,870 - -0.8
1,652,873 + -3.0
1,652,873 + +0.7
1,652,874 - -2.8
1,652,903 + +1.3
1,652,904 - -3.4
1,652,934 + yhdE MCAODC_08260 0.13 +0.8
1,652,934 + yhdE MCAODC_08260 0.13 -1.1
1,652,934 + yhdE MCAODC_08260 0.13 -0.6
1,652,934 + yhdE MCAODC_08260 0.13 +0.3
1,652,934 + yhdE MCAODC_08260 0.13 -1.2
1,652,940 + yhdE MCAODC_08260 0.14 +0.1
1,652,986 + yhdE MCAODC_08260 0.22 -3.0
1,652,986 + yhdE MCAODC_08260 0.22 -0.0
1,652,986 + yhdE MCAODC_08260 0.22 -0.1
1,652,986 + yhdE MCAODC_08260 0.22 +0.5
1,652,987 - yhdE MCAODC_08260 0.22 +0.8
1,652,987 - yhdE MCAODC_08260 0.22 +0.2
1,653,070 - yhdE MCAODC_08260 0.36 +1.2
1,653,070 - yhdE MCAODC_08260 0.36 -0.6
1,653,144 - yhdE MCAODC_08260 0.48 +0.3
1,653,291 + yhdE MCAODC_08260 0.73 -0.1
1,653,292 - yhdE MCAODC_08260 0.73 +0.8
1,653,304 + yhdE MCAODC_08260 0.75 -0.5
1,653,305 - yhdE MCAODC_08260 0.75 +1.6
1,653,310 - yhdE MCAODC_08260 0.76 +0.0
1,653,345 - yhdE MCAODC_08260 0.82 +0.7
1,653,355 + yhdE MCAODC_08260 0.84 +0.2
1,653,355 + yhdE MCAODC_08260 0.84 +0.4
1,653,356 - yhdE MCAODC_08260 0.84 +0.2
1,653,356 - yhdE MCAODC_08260 0.84 -0.2
1,653,391 + -0.2
1,653,398 + -1.9
1,653,399 - +0.4
1,653,399 - +1.9
1,653,457 - -1.2
1,653,466 - -1.2
1,653,491 + -2.2
1,653,491 + +0.4
1,653,491 + +0.6
1,653,493 + +1.1
1,653,549 + -0.9
1,653,553 - +1.0
1,653,560 - +2.8
1,653,563 + -0.8
1,653,563 + +0.2
1,653,564 - -0.7
1,653,576 + +0.9
1,653,576 + -1.2
1,653,585 + +2.1
1,653,612 + rng MCAODC_08265 0.12 +0.1
1,653,616 + rng MCAODC_08265 0.12 -0.8
1,653,617 - rng MCAODC_08265 0.12 -0.7

Or see this region's nucleotide sequence