Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and trxA are separated by 326 nucleotides trxA and rhlB are separated by 130 nucleotides
MCAODC_05095: rho - transcription termination factor Rho, at 1,025,099 to 1,026,358
rho
MCAODC_05100: trxA - thioredoxin TrxA, at 1,026,685 to 1,027,014
trxA
MCAODC_05105: rhlB - ATP-dependent RNA helicase RhlB, at 1,027,145 to 1,028,410
rhlB
Position (kb) 1026
1027
1028 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1026.399 kb on - strand at 1026.484 kb on - strand at 1026.547 kb on - strand at 1026.547 kb on - strand at 1026.547 kb on - strand at 1026.552 kb on - strand at 1026.589 kb on - strand at 1026.592 kb on - strand at 1026.597 kb on - strand at 1026.597 kb on - strand at 1026.603 kb on - strand at 1026.619 kb on + strand at 1026.619 kb on + strand at 1026.619 kb on + strand at 1026.620 kb on - strand at 1026.624 kb on + strand at 1026.625 kb on - strand at 1026.625 kb on - strand at 1026.654 kb on + strand at 1026.686 kb on + strand at 1026.803 kb on + strand, within trxA at 1026.804 kb on - strand, within trxA at 1026.867 kb on - strand, within trxA at 1026.964 kb on + strand, within trxA at 1026.965 kb on - strand, within trxA at 1026.965 kb on - strand, within trxA at 1027.000 kb on - strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.014 kb on + strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.015 kb on - strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.016 kb on + strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.017 kb on - strand at 1027.018 kb on + strand at 1027.018 kb on + strand at 1027.018 kb on + strand at 1027.019 kb on - strand at 1027.019 kb on - strand at 1027.032 kb on + strand at 1027.032 kb on + strand at 1027.033 kb on - strand at 1027.033 kb on - strand at 1027.033 kb on - strand at 1027.033 kb on - strand at 1027.063 kb on + strand at 1027.063 kb on + strand at 1027.063 kb on + strand at 1027.064 kb on - strand at 1027.077 kb on + strand at 1027.090 kb on + strand at 1027.113 kb on - strand at 1027.121 kb on - strand at 1027.121 kb on - strand at 1027.121 kb on - strand at 1027.123 kb on + strand at 1027.123 kb on + strand at 1027.123 kb on + strand at 1027.123 kb on + strand at 1027.124 kb on - strand at 1027.124 kb on - strand at 1027.124 kb on - strand at 1027.136 kb on + strand at 1027.136 kb on + strand at 1027.144 kb on + strand at 1027.240 kb on + strand at 1027.290 kb on + strand, within rhlB at 1027.336 kb on + strand, within rhlB at 1027.337 kb on - strand, within rhlB at 1027.407 kb on + strand, within rhlB at 1027.407 kb on + strand, within rhlB at 1027.407 kb on + strand, within rhlB at 1027.408 kb on - strand, within rhlB at 1027.411 kb on + strand, within rhlB at 1027.411 kb on + strand, within rhlB at 1027.412 kb on - strand, within rhlB at 1027.412 kb on - strand, within rhlB at 1027.499 kb on + strand, within rhlB at 1027.514 kb on + strand, within rhlB at 1027.578 kb on + strand, within rhlB at 1027.587 kb on - strand, within rhlB at 1027.627 kb on - strand, within rhlB at 1027.627 kb on - strand, within rhlB at 1027.655 kb on + strand, within rhlB at 1027.655 kb on + strand, within rhlB at 1027.655 kb on + strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.656 kb on - strand, within rhlB at 1027.669 kb on + strand, within rhlB at 1027.669 kb on + strand, within rhlB at 1027.679 kb on - strand, within rhlB at 1027.759 kb on - strand, within rhlB at 1027.796 kb on + strand, within rhlB at 1027.796 kb on + strand, within rhlB at 1027.797 kb on - strand, within rhlB at 1027.798 kb on + strand, within rhlB at 1027.834 kb on + strand, within rhlB at 1027.835 kb on - strand, within rhlB at 1027.838 kb on - strand, within rhlB at 1027.861 kb on + strand, within rhlB at 1027.861 kb on + strand, within rhlB at 1027.862 kb on - strand, within rhlB at 1027.924 kb on + strand, within rhlB at 1027.925 kb on - strand, within rhlB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,026,399 - -0.3 1,026,484 - -1.9 1,026,547 - -1.7 1,026,547 - -2.0 1,026,547 - +0.0 1,026,552 - -2.5 1,026,589 - -1.4 1,026,592 - -0.9 1,026,597 - -2.1 1,026,597 - +1.8 1,026,603 - -1.8 1,026,619 + -1.4 1,026,619 + -1.3 1,026,619 + -3.7 1,026,620 - -0.6 1,026,624 + +1.2 1,026,625 - +0.1 1,026,625 - +0.0 1,026,654 + -3.4 1,026,686 + +0.2 1,026,803 + trxA MCAODC_05100 0.36 -0.3 1,026,804 - trxA MCAODC_05100 0.36 -1.9 1,026,867 - trxA MCAODC_05100 0.55 -2.0 1,026,964 + trxA MCAODC_05100 0.85 -0.0 1,026,965 - trxA MCAODC_05100 0.85 -0.3 1,026,965 - trxA MCAODC_05100 0.85 -1.1 1,027,000 - -3.0 1,027,014 + -2.6 1,027,014 + -0.4 1,027,014 + -1.4 1,027,014 + -0.4 1,027,014 + -0.5 1,027,014 + -1.2 1,027,014 + -0.4 1,027,015 - -3.0 1,027,015 - -2.6 1,027,015 - -0.2 1,027,015 - -1.1 1,027,015 - -2.1 1,027,015 - -0.8 1,027,015 - -1.6 1,027,016 + -2.7 1,027,016 + -1.2 1,027,016 + +0.6 1,027,016 + -1.4 1,027,016 + -0.1 1,027,016 + +0.2 1,027,016 + -4.6 1,027,016 + -1.1 1,027,017 - -0.5 1,027,017 - -2.0 1,027,017 - -1.9 1,027,017 - -0.5 1,027,017 - +0.0 1,027,017 - -2.0 1,027,017 - -1.7 1,027,017 - -1.2 1,027,017 - -0.4 1,027,018 + -2.8 1,027,018 + -2.1 1,027,018 + -1.3 1,027,019 - -1.7 1,027,019 - -0.4 1,027,032 + -2.4 1,027,032 + -0.6 1,027,033 - -1.4 1,027,033 - -2.2 1,027,033 - -0.1 1,027,033 - +0.6 1,027,063 + -0.6 1,027,063 + -1.9 1,027,063 + -0.9 1,027,064 - -0.8 1,027,077 + -1.5 1,027,090 + +0.4 1,027,113 - +0.3 1,027,121 - -0.3 1,027,121 - -0.8 1,027,121 - +0.1 1,027,123 + +0.3 1,027,123 + +1.0 1,027,123 + -0.0 1,027,123 + -0.6 1,027,124 - -0.3 1,027,124 - +0.2 1,027,124 - -1.0 1,027,136 + +0.2 1,027,136 + +0.2 1,027,144 + -0.8 1,027,240 + -0.8 1,027,290 + rhlB MCAODC_05105 0.11 -0.5 1,027,336 + rhlB MCAODC_05105 0.15 -0.8 1,027,337 - rhlB MCAODC_05105 0.15 +0.9 1,027,407 + rhlB MCAODC_05105 0.21 +0.7 1,027,407 + rhlB MCAODC_05105 0.21 +0.4 1,027,407 + rhlB MCAODC_05105 0.21 +0.2 1,027,408 - rhlB MCAODC_05105 0.21 -1.1 1,027,411 + rhlB MCAODC_05105 0.21 +0.3 1,027,411 + rhlB MCAODC_05105 0.21 -0.1 1,027,412 - rhlB MCAODC_05105 0.21 -1.3 1,027,412 - rhlB MCAODC_05105 0.21 -0.8 1,027,499 + rhlB MCAODC_05105 0.28 +0.3 1,027,514 + rhlB MCAODC_05105 0.29 -2.1 1,027,578 + rhlB MCAODC_05105 0.34 -0.5 1,027,587 - rhlB MCAODC_05105 0.35 +1.4 1,027,627 - rhlB MCAODC_05105 0.38 +0.4 1,027,627 - rhlB MCAODC_05105 0.38 -0.5 1,027,655 + rhlB MCAODC_05105 0.40 -1.6 1,027,655 + rhlB MCAODC_05105 0.40 -2.3 1,027,655 + rhlB MCAODC_05105 0.40 -1.1 1,027,656 - rhlB MCAODC_05105 0.40 -0.2 1,027,656 - rhlB MCAODC_05105 0.40 -2.3 1,027,656 - rhlB MCAODC_05105 0.40 -1.5 1,027,656 - rhlB MCAODC_05105 0.40 +0.3 1,027,656 - rhlB MCAODC_05105 0.40 -1.5 1,027,656 - rhlB MCAODC_05105 0.40 -1.0 1,027,669 + rhlB MCAODC_05105 0.41 +3.1 1,027,669 + rhlB MCAODC_05105 0.41 -3.7 1,027,679 - rhlB MCAODC_05105 0.42 +0.3 1,027,759 - rhlB MCAODC_05105 0.48 +0.7 1,027,796 + rhlB MCAODC_05105 0.51 -0.6 1,027,796 + rhlB MCAODC_05105 0.51 -0.4 1,027,797 - rhlB MCAODC_05105 0.52 +0.5 1,027,798 + rhlB MCAODC_05105 0.52 +0.2 1,027,834 + rhlB MCAODC_05105 0.54 -2.8 1,027,835 - rhlB MCAODC_05105 0.55 -0.7 1,027,838 - rhlB MCAODC_05105 0.55 +0.9 1,027,861 + rhlB MCAODC_05105 0.57 -0.4 1,027,861 + rhlB MCAODC_05105 0.57 +0.4 1,027,862 - rhlB MCAODC_05105 0.57 -0.7 1,027,924 + rhlB MCAODC_05105 0.62 -1.4 1,027,925 - rhlB MCAODC_05105 0.62 -0.5
Or see this region's nucleotide sequence