Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zraS and MCAODC_03830 are separated by 106 nucleotides MCAODC_03830 and zraP are separated by 2 nucleotides zraP and yjaH are separated by 1 nucleotides yjaH and hupA are separated by 72 nucleotides hupA and yjaG are separated by 186 nucleotides
MCAODC_03825: zraS - two-component system sensor histidine kinase ZraS, at 774,025 to 775,401
zraS
MCAODC_03830: MCAODC_03830 - zinc resistance-associated protein, at 775,508 to 775,636
_03830
MCAODC_03835: zraP - zinc resistance sensor/chaperone ZraP, at 775,639 to 776,064
zraP
MCAODC_03840: yjaH - Uncharacterized protein YjaH, at 776,066 to 776,701
yjaH
MCAODC_03845: hupA - DNA-binding protein HU-alpha, at 776,774 to 777,046
hupA
MCAODC_03850: yjaG - Uncharacterized protein YjaG, at 777,233 to 777,823
yjaG
Position (kb) 776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 775.086 kb on + strand, within zraS at 775.086 kb on + strand, within zraS at 775.086 kb on + strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.132 kb on + strand, within zraS at 775.133 kb on - strand, within zraS at 775.133 kb on - strand, within zraS at 775.133 kb on - strand, within zraS at 775.233 kb on + strand, within zraS at 775.233 kb on + strand, within zraS at 775.234 kb on - strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.238 kb on - strand, within zraS at 775.238 kb on - strand, within zraS at 775.238 kb on - strand, within zraS at 775.365 kb on + strand at 775.365 kb on + strand at 775.369 kb on + strand at 775.370 kb on - strand at 775.370 kb on - strand at 775.381 kb on - strand at 775.381 kb on - strand at 775.392 kb on + strand at 775.392 kb on + strand at 775.392 kb on + strand at 775.393 kb on - strand at 775.549 kb on + strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.571 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.615 kb on - strand, within MCAODC_03830 at 775.615 kb on - strand, within MCAODC_03830 at 775.667 kb on + strand at 775.667 kb on + strand at 775.668 kb on - strand at 775.731 kb on + strand, within zraP at 775.731 kb on + strand, within zraP at 775.732 kb on - strand, within zraP at 775.804 kb on + strand, within zraP at 775.804 kb on + strand, within zraP at 775.805 kb on - strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.887 kb on + strand, within zraP at 775.941 kb on - strand, within zraP at 775.949 kb on + strand, within zraP at 776.043 kb on + strand at 776.118 kb on - strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.124 kb on - strand at 776.124 kb on - strand at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.230 kb on + strand, within yjaH at 776.231 kb on - strand, within yjaH at 776.312 kb on + strand, within yjaH at 776.324 kb on - strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.356 kb on - strand, within yjaH at 776.358 kb on - strand, within yjaH at 776.413 kb on + strand, within yjaH at 776.413 kb on + strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.453 kb on - strand, within yjaH at 776.482 kb on + strand, within yjaH at 776.483 kb on - strand, within yjaH at 776.517 kb on + strand, within yjaH at 776.517 kb on + strand, within yjaH at 776.606 kb on + strand, within yjaH at 776.668 kb on + strand at 776.750 kb on - strand at 776.750 kb on - strand at 776.775 kb on + strand at 776.776 kb on - strand at 776.776 kb on - strand at 776.779 kb on + strand at 776.779 kb on + strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.824 kb on + strand, within hupA at 776.824 kb on + strand, within hupA at 776.825 kb on - strand, within hupA at 776.922 kb on - strand, within hupA at 776.984 kb on - strand, within hupA at 777.021 kb on - strand at 777.021 kb on - strand at 777.046 kb on + strand at 777.046 kb on + strand at 777.047 kb on - strand at 777.051 kb on + strand at 777.057 kb on + strand at 777.057 kb on + strand at 777.058 kb on - strand at 777.058 kb on - strand at 777.058 kb on - strand at 777.069 kb on - strand at 777.078 kb on + strand at 777.078 kb on + strand at 777.078 kb on + strand at 777.079 kb on - strand at 777.108 kb on + strand at 777.108 kb on + strand at 777.108 kb on + strand at 777.109 kb on - strand at 777.123 kb on + strand at 777.162 kb on + strand at 777.163 kb on - strand at 777.214 kb on + strand at 777.214 kb on + strand at 777.214 kb on + strand at 777.215 kb on - strand at 777.234 kb on + strand at 777.235 kb on - strand at 777.249 kb on - strand at 777.256 kb on + strand at 777.299 kb on + strand, within yjaG at 777.332 kb on + strand, within yjaG at 777.375 kb on - strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.525 kb on - strand, within yjaG at 777.561 kb on + strand, within yjaG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 775,086 + zraS MCAODC_03825 0.77 +0.5 775,086 + zraS MCAODC_03825 0.77 +0.6 775,086 + zraS MCAODC_03825 0.77 -1.6 775,087 - zraS MCAODC_03825 0.77 +0.8 775,087 - zraS MCAODC_03825 0.77 +0.5 775,087 - zraS MCAODC_03825 0.77 +0.7 775,087 - zraS MCAODC_03825 0.77 -0.0 775,087 - zraS MCAODC_03825 0.77 +0.2 775,087 - zraS MCAODC_03825 0.77 +0.5 775,087 - zraS MCAODC_03825 0.77 -0.6 775,132 + zraS MCAODC_03825 0.80 -0.4 775,133 - zraS MCAODC_03825 0.80 +0.1 775,133 - zraS MCAODC_03825 0.80 +1.1 775,133 - zraS MCAODC_03825 0.80 -0.2 775,233 + zraS MCAODC_03825 0.88 +0.6 775,233 + zraS MCAODC_03825 0.88 -0.7 775,234 - zraS MCAODC_03825 0.88 +0.9 775,237 + zraS MCAODC_03825 0.88 +2.3 775,237 + zraS MCAODC_03825 0.88 +0.7 775,237 + zraS MCAODC_03825 0.88 +0.2 775,237 + zraS MCAODC_03825 0.88 +1.0 775,237 + zraS MCAODC_03825 0.88 -1.4 775,238 - zraS MCAODC_03825 0.88 +0.2 775,238 - zraS MCAODC_03825 0.88 -0.6 775,238 - zraS MCAODC_03825 0.88 -1.3 775,365 + -0.4 775,365 + +1.4 775,369 + -1.2 775,370 - -0.1 775,370 - -0.6 775,381 - -0.9 775,381 - -0.2 775,392 + +0.1 775,392 + -0.1 775,392 + +0.3 775,393 - -0.5 775,549 + MCAODC_03830 0.32 +0.5 775,550 - MCAODC_03830 0.33 -0.9 775,550 - MCAODC_03830 0.33 +1.1 775,550 - MCAODC_03830 0.33 +0.5 775,571 + MCAODC_03830 0.49 -0.2 775,614 + MCAODC_03830 0.82 -0.5 775,614 + MCAODC_03830 0.82 +0.1 775,614 + MCAODC_03830 0.82 -0.4 775,615 - MCAODC_03830 0.83 -0.4 775,615 - MCAODC_03830 0.83 +0.0 775,667 + +0.2 775,667 + -0.4 775,668 - +1.0 775,731 + zraP MCAODC_03835 0.22 -0.3 775,731 + zraP MCAODC_03835 0.22 -0.3 775,732 - zraP MCAODC_03835 0.22 +0.9 775,804 + zraP MCAODC_03835 0.39 -0.7 775,804 + zraP MCAODC_03835 0.39 -2.9 775,805 - zraP MCAODC_03835 0.39 +0.0 775,855 + zraP MCAODC_03835 0.51 +1.2 775,855 + zraP MCAODC_03835 0.51 -0.8 775,855 + zraP MCAODC_03835 0.51 +0.1 775,855 + zraP MCAODC_03835 0.51 -0.0 775,855 + zraP MCAODC_03835 0.51 +0.9 775,856 - zraP MCAODC_03835 0.51 +1.5 775,856 - zraP MCAODC_03835 0.51 +0.8 775,856 - zraP MCAODC_03835 0.51 +0.5 775,856 - zraP MCAODC_03835 0.51 +0.6 775,856 - zraP MCAODC_03835 0.51 +0.0 775,856 - zraP MCAODC_03835 0.51 +0.1 775,887 + zraP MCAODC_03835 0.58 -0.1 775,941 - zraP MCAODC_03835 0.71 +0.0 775,949 + zraP MCAODC_03835 0.73 +0.7 776,043 + -0.0 776,118 - -0.3 776,123 + +1.2 776,123 + +0.0 776,123 + +0.7 776,124 - -1.0 776,124 - +0.2 776,219 + yjaH MCAODC_03840 0.24 -0.5 776,219 + yjaH MCAODC_03840 0.24 -0.2 776,219 + yjaH MCAODC_03840 0.24 -3.0 776,230 + yjaH MCAODC_03840 0.26 +2.3 776,231 - yjaH MCAODC_03840 0.26 -1.4 776,312 + yjaH MCAODC_03840 0.39 +0.9 776,324 - yjaH MCAODC_03840 0.41 +0.2 776,355 + yjaH MCAODC_03840 0.45 +0.7 776,355 + yjaH MCAODC_03840 0.45 +0.2 776,356 - yjaH MCAODC_03840 0.46 -1.9 776,358 - yjaH MCAODC_03840 0.46 -0.4 776,413 + yjaH MCAODC_03840 0.55 -0.2 776,413 + yjaH MCAODC_03840 0.55 -0.9 776,414 - yjaH MCAODC_03840 0.55 -0.2 776,414 - yjaH MCAODC_03840 0.55 -2.2 776,414 - yjaH MCAODC_03840 0.55 +0.5 776,414 - yjaH MCAODC_03840 0.55 -0.4 776,453 - yjaH MCAODC_03840 0.61 -0.6 776,482 + yjaH MCAODC_03840 0.65 -2.4 776,483 - yjaH MCAODC_03840 0.66 -0.7 776,517 + yjaH MCAODC_03840 0.71 +0.8 776,517 + yjaH MCAODC_03840 0.71 +0.1 776,606 + yjaH MCAODC_03840 0.85 +0.8 776,668 + +0.1 776,750 - -1.1 776,750 - -0.7 776,775 + -0.8 776,776 - -1.8 776,776 - +0.6 776,779 + +0.7 776,779 + -0.5 776,780 - -0.2 776,780 - +0.2 776,780 - -1.1 776,780 - -0.4 776,824 + hupA MCAODC_03845 0.18 -0.7 776,824 + hupA MCAODC_03845 0.18 -0.6 776,825 - hupA MCAODC_03845 0.19 -0.8 776,922 - hupA MCAODC_03845 0.54 -0.5 776,984 - hupA MCAODC_03845 0.77 -1.5 777,021 - -0.7 777,021 - -0.3 777,046 + -0.3 777,046 + -0.1 777,047 - -1.4 777,051 + -0.7 777,057 + -3.4 777,057 + -0.4 777,058 - -0.1 777,058 - -1.9 777,058 - -1.0 777,069 - -0.3 777,078 + -1.2 777,078 + -1.2 777,078 + -1.5 777,079 - -0.6 777,108 + -0.6 777,108 + -0.8 777,108 + -0.4 777,109 - -0.4 777,123 + -0.3 777,162 + -3.5 777,163 - -2.2 777,214 + +0.4 777,214 + +0.5 777,214 + -0.5 777,215 - +1.1 777,234 + +0.0 777,235 - +0.2 777,249 - -0.7 777,256 + -0.2 777,299 + yjaG MCAODC_03850 0.11 +0.2 777,332 + yjaG MCAODC_03850 0.17 -0.2 777,375 - yjaG MCAODC_03850 0.24 -0.4 777,463 + yjaG MCAODC_03850 0.39 -0.9 777,463 + yjaG MCAODC_03850 0.39 +1.7 777,463 + yjaG MCAODC_03850 0.39 +0.9 777,464 - yjaG MCAODC_03850 0.39 +0.3 777,464 - yjaG MCAODC_03850 0.39 +0.4 777,464 - yjaG MCAODC_03850 0.39 +0.4 777,464 - yjaG MCAODC_03850 0.39 -1.2 777,464 - yjaG MCAODC_03850 0.39 +1.9 777,525 - yjaG MCAODC_03850 0.49 -0.5 777,561 + yjaG MCAODC_03850 0.55 -2.9
Or see this region's nucleotide sequence