Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ghoS and yjdJ are separated by 226 nucleotides yjdJ and yjdI are separated by 11 nucleotides yjdI and dcuS are separated by 180 nucleotides dcuS and dcuR overlap by 4 nucleotides
MCAODC_03005: ghoS - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 606,735 to 607,031
ghoS
MCAODC_03010: yjdJ - Uncharacterized protein YjdJ, at 607,258 to 607,530
yjdJ
MCAODC_03015: yjdI - Uncharacterized protein YjdI, at 607,542 to 607,772
yjdI
MCAODC_03020: dcuS - Sensor histidine kinase DcuS, at 607,953 to 609,584
dcuS
MCAODC_03025: dcuR - two-component system response regulator DcuR, at 609,581 to 610,300
dcuR
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 607.003 kb on + strand at 607.004 kb on - strand at 607.004 kb on - strand at 607.004 kb on - strand at 607.006 kb on - strand at 607.008 kb on - strand at 607.101 kb on + strand at 607.101 kb on + strand at 607.104 kb on - strand at 607.130 kb on - strand at 607.278 kb on - strand at 607.278 kb on - strand at 607.278 kb on - strand at 607.420 kb on - strand, within yjdJ at 607.495 kb on - strand, within yjdJ at 607.533 kb on + strand at 607.555 kb on + strand at 607.580 kb on + strand, within yjdI at 607.649 kb on + strand, within yjdI at 607.650 kb on - strand, within yjdI at 607.653 kb on + strand, within yjdI at 607.671 kb on + strand, within yjdI at 607.671 kb on + strand, within yjdI at 607.672 kb on - strand, within yjdI at 607.696 kb on - strand, within yjdI at 607.696 kb on - strand, within yjdI at 607.696 kb on - strand, within yjdI at 607.735 kb on + strand, within yjdI at 607.735 kb on + strand, within yjdI at 607.736 kb on - strand, within yjdI at 607.794 kb on - strand at 607.805 kb on + strand at 607.805 kb on + strand at 607.805 kb on + strand at 607.805 kb on + strand at 607.807 kb on + strand at 607.807 kb on + strand at 607.807 kb on + strand at 607.807 kb on + strand at 607.808 kb on - strand at 607.808 kb on - strand at 607.808 kb on - strand at 607.831 kb on - strand at 607.869 kb on + strand at 607.870 kb on - strand at 607.870 kb on - strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.872 kb on - strand at 607.872 kb on - strand at 607.872 kb on - strand at 607.873 kb on + strand at 607.873 kb on + strand at 607.873 kb on + strand at 607.874 kb on - strand at 607.874 kb on - strand at 607.887 kb on + strand at 607.887 kb on + strand at 607.888 kb on - strand at 607.919 kb on + strand at 607.919 kb on + strand at 607.981 kb on + strand at 607.981 kb on + strand at 608.020 kb on + strand at 608.020 kb on + strand at 608.020 kb on + strand at 608.021 kb on - strand at 608.021 kb on - strand at 608.021 kb on - strand at 608.071 kb on - strand at 608.090 kb on + strand at 608.091 kb on - strand at 608.243 kb on + strand, within dcuS at 608.243 kb on + strand, within dcuS at 608.275 kb on - strand, within dcuS at 608.298 kb on - strand, within dcuS at 608.313 kb on - strand, within dcuS at 608.331 kb on - strand, within dcuS at 608.395 kb on + strand, within dcuS at 608.395 kb on + strand, within dcuS at 608.396 kb on - strand, within dcuS at 608.409 kb on + strand, within dcuS at 608.409 kb on + strand, within dcuS at 608.410 kb on - strand, within dcuS at 608.458 kb on + strand, within dcuS at 608.501 kb on + strand, within dcuS at 608.501 kb on + strand, within dcuS at 608.501 kb on + strand, within dcuS at 608.502 kb on - strand, within dcuS at 608.515 kb on + strand, within dcuS at 608.515 kb on + strand, within dcuS at 608.516 kb on - strand, within dcuS at 608.516 kb on - strand, within dcuS at 608.642 kb on + strand, within dcuS at 608.721 kb on + strand, within dcuS at 608.721 kb on + strand, within dcuS at 608.722 kb on - strand, within dcuS at 608.782 kb on + strand, within dcuS at 608.782 kb on + strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.783 kb on - strand, within dcuS at 608.840 kb on + strand, within dcuS at 608.841 kb on - strand, within dcuS at 608.854 kb on + strand, within dcuS at 608.854 kb on + strand, within dcuS at 608.855 kb on - strand, within dcuS at 608.855 kb on - strand, within dcuS at 608.882 kb on + strand, within dcuS at 608.883 kb on - strand, within dcuS at 608.937 kb on - strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.970 kb on + strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 608.971 kb on - strand, within dcuS at 609.011 kb on + strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.012 kb on - strand, within dcuS at 609.051 kb on + strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.052 kb on - strand, within dcuS at 609.053 kb on + strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.054 kb on - strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.069 kb on + strand, within dcuS at 609.070 kb on - strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.089 kb on + strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.090 kb on - strand, within dcuS at 609.093 kb on + strand, within dcuS at 609.094 kb on - strand, within dcuS at 609.094 kb on - strand, within dcuS at 609.122 kb on + strand, within dcuS at 609.123 kb on - strand, within dcuS at 609.185 kb on - strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.191 kb on + strand, within dcuS at 609.192 kb on - strand, within dcuS at 609.260 kb on + strand, within dcuS at 609.302 kb on - strand, within dcuS at 609.326 kb on + strand, within dcuS at 609.372 kb on - strand, within dcuS at 609.372 kb on - strand, within dcuS at 609.484 kb on + strand at 609.553 kb on + strand at 609.594 kb on + strand at 609.594 kb on + strand at 609.594 kb on + strand at 609.638 kb on + strand at 609.642 kb on + strand at 609.642 kb on + strand at 609.642 kb on + strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.643 kb on - strand at 609.706 kb on + strand, within dcuR at 609.707 kb on - strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.752 kb on + strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.753 kb on - strand, within dcuR at 609.754 kb on + strand, within dcuR at 609.781 kb on - strand, within dcuR at 609.781 kb on - strand, within dcuR at 609.797 kb on - strand, within dcuR at 609.888 kb on - strand, within dcuR at 609.974 kb on + strand, within dcuR at 609.974 kb on + strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.975 kb on - strand, within dcuR at 609.977 kb on + strand, within dcuR at 609.977 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.002 kb on + strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.003 kb on - strand, within dcuR at 610.109 kb on + strand, within dcuR at 610.132 kb on - strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.172 kb on + strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.173 kb on - strand, within dcuR at 610.177 kb on + strand, within dcuR at 610.178 kb on - strand, within dcuR at 610.178 kb on - strand, within dcuR at 610.271 kb on + strand at 610.278 kb on + strand at 610.289 kb on + strand at 610.330 kb on + strand at 610.330 kb on + strand at 610.348 kb on + strand at 610.349 kb on - strand at 610.400 kb on + strand at 610.402 kb on + strand at 610.433 kb on + strand at 610.434 kb on - strand at 610.494 kb on - strand at 610.494 kb on - strand at 610.507 kb on + strand at 610.508 kb on - strand at 610.544 kb on - strand at 610.548 kb on + strand at 610.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 607,003 + +0.6 607,004 - +0.6 607,004 - -1.9 607,004 - -0.3 607,006 - -1.4 607,008 - -0.9 607,101 + +0.8 607,101 + +1.1 607,104 - -0.7 607,130 - +1.7 607,278 - -0.5 607,278 - -1.2 607,278 - -3.2 607,420 - yjdJ MCAODC_03010 0.59 -0.1 607,495 - yjdJ MCAODC_03010 0.87 -1.9 607,533 + +0.4 607,555 + -1.2 607,580 + yjdI MCAODC_03015 0.16 -1.1 607,649 + yjdI MCAODC_03015 0.46 -0.1 607,650 - yjdI MCAODC_03015 0.47 +0.5 607,653 + yjdI MCAODC_03015 0.48 +0.8 607,671 + yjdI MCAODC_03015 0.56 +0.8 607,671 + yjdI MCAODC_03015 0.56 +0.6 607,672 - yjdI MCAODC_03015 0.56 +0.8 607,696 - yjdI MCAODC_03015 0.67 -1.5 607,696 - yjdI MCAODC_03015 0.67 -0.2 607,696 - yjdI MCAODC_03015 0.67 -1.9 607,735 + yjdI MCAODC_03015 0.84 -3.2 607,735 + yjdI MCAODC_03015 0.84 +0.7 607,736 - yjdI MCAODC_03015 0.84 +0.5 607,794 - +2.2 607,805 + +0.6 607,805 + +0.8 607,805 + +0.4 607,805 + -1.2 607,807 + +0.7 607,807 + +2.3 607,807 + +0.2 607,807 + +0.1 607,808 - -0.2 607,808 - -3.1 607,808 - -0.7 607,831 - -0.4 607,869 + +0.8 607,870 - +1.0 607,870 - -0.9 607,871 + +1.1 607,871 + +0.3 607,871 + +1.1 607,871 + -0.5 607,872 - -0.1 607,872 - -0.2 607,872 - -2.9 607,873 + +0.7 607,873 + +0.6 607,873 + +1.3 607,874 - -0.3 607,874 - +0.1 607,887 + +0.7 607,887 + +0.8 607,888 - +1.5 607,919 + +0.3 607,919 + +1.3 607,981 + +1.3 607,981 + +0.8 608,020 + +0.3 608,020 + -0.3 608,020 + -0.5 608,021 - +1.1 608,021 - +1.7 608,021 - -1.1 608,071 - +0.8 608,090 + -0.2 608,091 - -1.0 608,243 + dcuS MCAODC_03020 0.18 -0.1 608,243 + dcuS MCAODC_03020 0.18 +0.1 608,275 - dcuS MCAODC_03020 0.20 +0.5 608,298 - dcuS MCAODC_03020 0.21 +0.1 608,313 - dcuS MCAODC_03020 0.22 +0.9 608,331 - dcuS MCAODC_03020 0.23 +0.1 608,395 + dcuS MCAODC_03020 0.27 +0.9 608,395 + dcuS MCAODC_03020 0.27 -0.7 608,396 - dcuS MCAODC_03020 0.27 +1.1 608,409 + dcuS MCAODC_03020 0.28 -0.4 608,409 + dcuS MCAODC_03020 0.28 -0.1 608,410 - dcuS MCAODC_03020 0.28 -1.5 608,458 + dcuS MCAODC_03020 0.31 -0.9 608,501 + dcuS MCAODC_03020 0.34 -0.1 608,501 + dcuS MCAODC_03020 0.34 -0.1 608,501 + dcuS MCAODC_03020 0.34 -1.2 608,502 - dcuS MCAODC_03020 0.34 -0.5 608,515 + dcuS MCAODC_03020 0.34 -0.3 608,515 + dcuS MCAODC_03020 0.34 -0.9 608,516 - dcuS MCAODC_03020 0.34 +0.5 608,516 - dcuS MCAODC_03020 0.34 -0.1 608,642 + dcuS MCAODC_03020 0.42 +0.4 608,721 + dcuS MCAODC_03020 0.47 +0.8 608,721 + dcuS MCAODC_03020 0.47 +0.2 608,722 - dcuS MCAODC_03020 0.47 -0.0 608,782 + dcuS MCAODC_03020 0.51 -0.6 608,782 + dcuS MCAODC_03020 0.51 -0.1 608,783 - dcuS MCAODC_03020 0.51 -1.8 608,783 - dcuS MCAODC_03020 0.51 -1.0 608,783 - dcuS MCAODC_03020 0.51 -0.3 608,783 - dcuS MCAODC_03020 0.51 -0.1 608,783 - dcuS MCAODC_03020 0.51 +0.3 608,783 - dcuS MCAODC_03020 0.51 -0.8 608,840 + dcuS MCAODC_03020 0.54 -0.1 608,841 - dcuS MCAODC_03020 0.54 +1.1 608,854 + dcuS MCAODC_03020 0.55 -2.1 608,854 + dcuS MCAODC_03020 0.55 +0.7 608,855 - dcuS MCAODC_03020 0.55 +0.1 608,855 - dcuS MCAODC_03020 0.55 -0.4 608,882 + dcuS MCAODC_03020 0.57 +0.4 608,883 - dcuS MCAODC_03020 0.57 -1.2 608,937 - dcuS MCAODC_03020 0.60 +0.1 608,970 + dcuS MCAODC_03020 0.62 +0.5 608,970 + dcuS MCAODC_03020 0.62 -2.2 608,970 + dcuS MCAODC_03020 0.62 +0.8 608,970 + dcuS MCAODC_03020 0.62 -0.5 608,970 + dcuS MCAODC_03020 0.62 -0.1 608,970 + dcuS MCAODC_03020 0.62 +1.5 608,971 - dcuS MCAODC_03020 0.62 -1.6 608,971 - dcuS MCAODC_03020 0.62 +0.2 608,971 - dcuS MCAODC_03020 0.62 +0.8 608,971 - dcuS MCAODC_03020 0.62 +0.7 608,971 - dcuS MCAODC_03020 0.62 -0.6 608,971 - dcuS MCAODC_03020 0.62 +0.4 608,971 - dcuS MCAODC_03020 0.62 -0.5 609,011 + dcuS MCAODC_03020 0.65 -0.4 609,012 - dcuS MCAODC_03020 0.65 +0.2 609,012 - dcuS MCAODC_03020 0.65 -1.5 609,012 - dcuS MCAODC_03020 0.65 -0.2 609,012 - dcuS MCAODC_03020 0.65 +0.3 609,051 + dcuS MCAODC_03020 0.67 +0.7 609,052 - dcuS MCAODC_03020 0.67 +0.1 609,052 - dcuS MCAODC_03020 0.67 +1.5 609,052 - dcuS MCAODC_03020 0.67 -1.8 609,052 - dcuS MCAODC_03020 0.67 +0.5 609,053 + dcuS MCAODC_03020 0.67 +1.5 609,054 - dcuS MCAODC_03020 0.67 +0.4 609,054 - dcuS MCAODC_03020 0.67 -0.9 609,054 - dcuS MCAODC_03020 0.67 +0.4 609,069 + dcuS MCAODC_03020 0.68 -0.0 609,069 + dcuS MCAODC_03020 0.68 +0.6 609,069 + dcuS MCAODC_03020 0.68 -0.2 609,069 + dcuS MCAODC_03020 0.68 +0.2 609,069 + dcuS MCAODC_03020 0.68 +0.3 609,070 - dcuS MCAODC_03020 0.68 -0.7 609,089 + dcuS MCAODC_03020 0.70 -0.3 609,089 + dcuS MCAODC_03020 0.70 -0.1 609,089 + dcuS MCAODC_03020 0.70 +0.7 609,089 + dcuS MCAODC_03020 0.70 +0.9 609,090 - dcuS MCAODC_03020 0.70 +0.2 609,090 - dcuS MCAODC_03020 0.70 +0.7 609,090 - dcuS MCAODC_03020 0.70 +0.0 609,093 + dcuS MCAODC_03020 0.70 -0.2 609,094 - dcuS MCAODC_03020 0.70 -2.1 609,094 - dcuS MCAODC_03020 0.70 +1.0 609,122 + dcuS MCAODC_03020 0.72 -1.8 609,123 - dcuS MCAODC_03020 0.72 +0.5 609,185 - dcuS MCAODC_03020 0.75 -0.1 609,191 + dcuS MCAODC_03020 0.76 -0.2 609,191 + dcuS MCAODC_03020 0.76 +0.2 609,191 + dcuS MCAODC_03020 0.76 +1.0 609,191 + dcuS MCAODC_03020 0.76 -1.8 609,191 + dcuS MCAODC_03020 0.76 +0.3 609,191 + dcuS MCAODC_03020 0.76 -0.5 609,192 - dcuS MCAODC_03020 0.76 +1.0 609,260 + dcuS MCAODC_03020 0.80 +0.3 609,302 - dcuS MCAODC_03020 0.83 -0.3 609,326 + dcuS MCAODC_03020 0.84 -0.0 609,372 - dcuS MCAODC_03020 0.87 +0.4 609,372 - dcuS MCAODC_03020 0.87 -1.7 609,484 + +0.4 609,553 + +1.0 609,594 + -1.2 609,594 + +0.6 609,594 + +0.3 609,638 + -0.2 609,642 + -0.0 609,642 + +0.1 609,642 + +0.2 609,643 - -1.4 609,643 - -0.0 609,643 - +0.6 609,643 - +0.2 609,706 + dcuR MCAODC_03025 0.17 -0.3 609,707 - dcuR MCAODC_03025 0.17 +0.9 609,752 + dcuR MCAODC_03025 0.24 +0.2 609,752 + dcuR MCAODC_03025 0.24 +0.5 609,752 + dcuR MCAODC_03025 0.24 +0.6 609,753 - dcuR MCAODC_03025 0.24 +0.8 609,753 - dcuR MCAODC_03025 0.24 +0.2 609,753 - dcuR MCAODC_03025 0.24 +0.5 609,753 - dcuR MCAODC_03025 0.24 -0.1 609,753 - dcuR MCAODC_03025 0.24 -0.8 609,753 - dcuR MCAODC_03025 0.24 +0.4 609,754 + dcuR MCAODC_03025 0.24 +0.5 609,781 - dcuR MCAODC_03025 0.28 +0.7 609,781 - dcuR MCAODC_03025 0.28 -2.3 609,797 - dcuR MCAODC_03025 0.30 -1.3 609,888 - dcuR MCAODC_03025 0.43 -0.3 609,974 + dcuR MCAODC_03025 0.55 +0.3 609,974 + dcuR MCAODC_03025 0.55 -0.4 609,975 - dcuR MCAODC_03025 0.55 -0.8 609,975 - dcuR MCAODC_03025 0.55 +0.1 609,975 - dcuR MCAODC_03025 0.55 -0.2 609,975 - dcuR MCAODC_03025 0.55 +0.1 609,977 + dcuR MCAODC_03025 0.55 +0.5 609,977 + dcuR MCAODC_03025 0.55 +0.6 610,002 + dcuR MCAODC_03025 0.58 -2.7 610,002 + dcuR MCAODC_03025 0.58 +0.1 610,002 + dcuR MCAODC_03025 0.58 -1.2 610,002 + dcuR MCAODC_03025 0.58 -1.2 610,003 - dcuR MCAODC_03025 0.59 +3.1 610,003 - dcuR MCAODC_03025 0.59 +0.6 610,003 - dcuR MCAODC_03025 0.59 -0.6 610,109 + dcuR MCAODC_03025 0.73 -0.6 610,132 - dcuR MCAODC_03025 0.77 -0.8 610,172 + dcuR MCAODC_03025 0.82 +0.4 610,172 + dcuR MCAODC_03025 0.82 +0.1 610,172 + dcuR MCAODC_03025 0.82 -1.2 610,173 - dcuR MCAODC_03025 0.82 -0.6 610,173 - dcuR MCAODC_03025 0.82 -0.1 610,173 - dcuR MCAODC_03025 0.82 -0.2 610,173 - dcuR MCAODC_03025 0.82 -0.1 610,173 - dcuR MCAODC_03025 0.82 +0.0 610,177 + dcuR MCAODC_03025 0.83 -0.6 610,178 - dcuR MCAODC_03025 0.83 +1.0 610,178 - dcuR MCAODC_03025 0.83 -0.9 610,271 + +3.1 610,278 + -1.1 610,289 + -1.7 610,330 + +0.5 610,330 + -4.0 610,348 + +1.6 610,349 - -0.9 610,400 + -0.5 610,402 + +0.1 610,433 + -0.1 610,434 - -1.1 610,494 - +0.2 610,494 - +0.3 610,507 + -2.7 610,508 - -0.3 610,544 - -1.9 610,548 + +0.6 610,549 - +1.1
Or see this region's nucleotide sequence