Strain Fitness in Escherichia coli ECRC101 around MCAODC_00665

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxB and lpxA overlap by 1 nucleotideslpxA and fabZ are separated by 3 nucleotidesfabZ and lpxD are separated by 104 nucleotides MCAODC_00660: lpxB - lipid-A-disaccharide synthase, at 109,371 to 110,519 lpxB MCAODC_00665: lpxA - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 110,519 to 111,307 lpxA MCAODC_00670: fabZ - 3-hydroxyacyl-ACP dehydratase FabZ, at 111,311 to 111,766 fabZ MCAODC_00675: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 111,871 to 112,896 lpxD Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1at 111.802 kb on - strandat 111.802 kb on - strandat 111.802 kb on - strandat 111.825 kb on + strandat 111.826 kb on - strandat 111.872 kb on + strandat 111.873 kb on - strandat 111.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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111,802 - -0.1
111,802 - +0.2
111,802 - -2.1
111,825 + +0.3
111,826 - -0.4
111,872 + +1.5
111,873 - -1.7
111,886 - +0.2

Or see this region's nucleotide sequence