Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19040

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19030 and LRK53_RS19035 overlap by 4 nucleotidesLRK53_RS19035 and LRK53_RS19040 are separated by 82 nucleotidesLRK53_RS19040 and LRK53_RS19045 are separated by 67 nucleotidesLRK53_RS19045 and LRK53_RS19050 are separated by 68 nucleotides LRK53_RS19030: LRK53_RS19030 - hypothetical protein, at 195,529 to 195,771 _RS19030 LRK53_RS19035: LRK53_RS19035 - DUF72 domain-containing protein, at 195,768 to 196,676 _RS19035 LRK53_RS19040: LRK53_RS19040 - hypothetical protein, at 196,759 to 197,139 _RS19040 LRK53_RS19045: LRK53_RS19045 - hypothetical protein, at 197,207 to 198,070 _RS19045 LRK53_RS19050: LRK53_RS19050 - hypothetical protein, at 198,139 to 198,804 _RS19050 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 195.774 kb on - strandat 195.831 kb on + strandat 195.832 kb on - strandat 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.871 kb on - strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.873 kb on + strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.874 kb on - strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.912 kb on + strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.913 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 195.916 kb on - strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.083 kb on + strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.084 kb on - strand, within LRK53_RS19035at 196.224 kb on + strand, within LRK53_RS19035at 196.225 kb on - strand, within LRK53_RS19035at 196.230 kb on + strand, within LRK53_RS19035at 196.231 kb on - strand, within LRK53_RS19035at 196.509 kb on + strand, within LRK53_RS19035at 196.509 kb on + strand, within LRK53_RS19035at 196.510 kb on - strand, within LRK53_RS19035at 196.515 kb on + strand, within LRK53_RS19035at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.813 kb on + strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.814 kb on - strand, within LRK53_RS19040at 196.907 kb on - strand, within LRK53_RS19040at 196.907 kb on - strand, within LRK53_RS19040at 196.933 kb on + strand, within LRK53_RS19040at 196.934 kb on - strand, within LRK53_RS19040at 196.934 kb on - strand, within LRK53_RS19040at 196.967 kb on + strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.968 kb on - strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 196.999 kb on + strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.000 kb on - strand, within LRK53_RS19040at 197.050 kb on - strand, within LRK53_RS19040at 197.066 kb on - strand, within LRK53_RS19040at 197.066 kb on - strand, within LRK53_RS19040at 197.137 kb on + strandat 197.137 kb on + strandat 197.137 kb on + strandat 197.137 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.201 kb on + strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.202 kb on - strandat 197.426 kb on + strand, within LRK53_RS19045at 197.427 kb on - strand, within LRK53_RS19045at 197.488 kb on + strand, within LRK53_RS19045at 197.561 kb on + strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.562 kb on - strand, within LRK53_RS19045at 197.627 kb on + strand, within LRK53_RS19045at 197.627 kb on + strand, within LRK53_RS19045at 197.628 kb on - strand, within LRK53_RS19045at 197.735 kb on + strand, within LRK53_RS19045at 197.736 kb on - strand, within LRK53_RS19045at 197.736 kb on - strand, within LRK53_RS19045at 197.736 kb on - strand, within LRK53_RS19045at 197.865 kb on + strand, within LRK53_RS19045at 197.865 kb on + strand, within LRK53_RS19045at 197.967 kb on + strand, within LRK53_RS19045at 197.967 kb on + strand, within LRK53_RS19045at 197.968 kb on - strand, within LRK53_RS19045at 197.968 kb on - strand, within LRK53_RS19045at 198.098 kb on + strandat 198.098 kb on + strandat 198.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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195,774 - -1.9
195,831 + -0.3
195,832 - +1.8
195,871 - LRK53_RS19035 0.11 -0.1
195,871 - LRK53_RS19035 0.11 +0.3
195,871 - LRK53_RS19035 0.11 -2.2
195,873 + LRK53_RS19035 0.12 -1.9
195,873 + LRK53_RS19035 0.12 +0.5
195,873 + LRK53_RS19035 0.12 -0.6
195,873 + LRK53_RS19035 0.12 -0.9
195,873 + LRK53_RS19035 0.12 -0.8
195,874 - LRK53_RS19035 0.12 +0.2
195,874 - LRK53_RS19035 0.12 -1.5
195,874 - LRK53_RS19035 0.12 +1.8
195,874 - LRK53_RS19035 0.12 -0.1
195,912 + LRK53_RS19035 0.16 +2.0
195,912 + LRK53_RS19035 0.16 -1.0
195,912 + LRK53_RS19035 0.16 -0.2
195,913 - LRK53_RS19035 0.16 +0.4
195,913 - LRK53_RS19035 0.16 -0.4
195,913 - LRK53_RS19035 0.16 -1.8
195,913 - LRK53_RS19035 0.16 -0.1
195,913 - LRK53_RS19035 0.16 +0.3
195,916 - LRK53_RS19035 0.16 +0.9
195,916 - LRK53_RS19035 0.16 -0.1
196,083 + LRK53_RS19035 0.35 +0.2
196,083 + LRK53_RS19035 0.35 -1.6
196,083 + LRK53_RS19035 0.35 -1.9
196,083 + LRK53_RS19035 0.35 +1.1
196,083 + LRK53_RS19035 0.35 -0.8
196,083 + LRK53_RS19035 0.35 -0.4
196,084 - LRK53_RS19035 0.35 +0.1
196,084 - LRK53_RS19035 0.35 -0.5
196,224 + LRK53_RS19035 0.50 -0.2
196,225 - LRK53_RS19035 0.50 -2.2
196,230 + LRK53_RS19035 0.51 +1.9
196,231 - LRK53_RS19035 0.51 -1.1
196,509 + LRK53_RS19035 0.82 -0.4
196,509 + LRK53_RS19035 0.82 -0.1
196,510 - LRK53_RS19035 0.82 +0.9
196,515 + LRK53_RS19035 0.82 -0.4
196,813 + LRK53_RS19040 0.14 -2.4
196,813 + LRK53_RS19040 0.14 +0.3
196,813 + LRK53_RS19040 0.14 -1.6
196,813 + LRK53_RS19040 0.14 -0.7
196,813 + LRK53_RS19040 0.14 -0.4
196,813 + LRK53_RS19040 0.14 +1.4
196,813 + LRK53_RS19040 0.14 +1.1
196,813 + LRK53_RS19040 0.14 -0.5
196,813 + LRK53_RS19040 0.14 +0.5
196,813 + LRK53_RS19040 0.14 -0.6
196,813 + LRK53_RS19040 0.14 -0.9
196,813 + LRK53_RS19040 0.14 -0.6
196,813 + LRK53_RS19040 0.14 -0.0
196,813 + LRK53_RS19040 0.14 +0.0
196,813 + LRK53_RS19040 0.14 +0.1
196,813 + LRK53_RS19040 0.14 -2.5
196,813 + LRK53_RS19040 0.14 -1.5
196,813 + LRK53_RS19040 0.14 +0.6
196,813 + LRK53_RS19040 0.14 -1.1
196,813 + LRK53_RS19040 0.14 +3.8
196,813 + LRK53_RS19040 0.14 -2.3
196,813 + LRK53_RS19040 0.14 -1.1
196,813 + LRK53_RS19040 0.14 +0.4
196,813 + LRK53_RS19040 0.14 +0.5
196,813 + LRK53_RS19040 0.14 -0.9
196,813 + LRK53_RS19040 0.14 -0.5
196,813 + LRK53_RS19040 0.14 -0.9
196,813 + LRK53_RS19040 0.14 +0.3
196,813 + LRK53_RS19040 0.14 -0.9
196,813 + LRK53_RS19040 0.14 -1.6
196,813 + LRK53_RS19040 0.14 +0.9
196,814 - LRK53_RS19040 0.14 -0.1
196,814 - LRK53_RS19040 0.14 -1.3
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 -1.5
196,814 - LRK53_RS19040 0.14 -0.9
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 +0.8
196,814 - LRK53_RS19040 0.14 -1.4
196,814 - LRK53_RS19040 0.14 +0.3
196,814 - LRK53_RS19040 0.14 +0.3
196,814 - LRK53_RS19040 0.14 +1.0
196,814 - LRK53_RS19040 0.14 -0.5
196,814 - LRK53_RS19040 0.14 -1.1
196,814 - LRK53_RS19040 0.14 +1.0
196,814 - LRK53_RS19040 0.14 -1.1
196,814 - LRK53_RS19040 0.14 +0.1
196,814 - LRK53_RS19040 0.14 +0.4
196,814 - LRK53_RS19040 0.14 -1.1
196,814 - LRK53_RS19040 0.14 -0.4
196,814 - LRK53_RS19040 0.14 -0.3
196,814 - LRK53_RS19040 0.14 -0.4
196,814 - LRK53_RS19040 0.14 -0.1
196,814 - LRK53_RS19040 0.14 +1.3
196,814 - LRK53_RS19040 0.14 +0.7
196,814 - LRK53_RS19040 0.14 +1.8
196,907 - LRK53_RS19040 0.39 +0.1
196,907 - LRK53_RS19040 0.39 +0.2
196,933 + LRK53_RS19040 0.46 -1.7
196,934 - LRK53_RS19040 0.46 +0.4
196,934 - LRK53_RS19040 0.46 -0.3
196,967 + LRK53_RS19040 0.55 -0.8
196,968 - LRK53_RS19040 0.55 -0.6
196,968 - LRK53_RS19040 0.55 -1.6
196,968 - LRK53_RS19040 0.55 +0.0
196,999 + LRK53_RS19040 0.63 -0.3
196,999 + LRK53_RS19040 0.63 -0.4
196,999 + LRK53_RS19040 0.63 +1.5
196,999 + LRK53_RS19040 0.63 -1.7
196,999 + LRK53_RS19040 0.63 -1.2
196,999 + LRK53_RS19040 0.63 -0.2
196,999 + LRK53_RS19040 0.63 +0.7
197,000 - LRK53_RS19040 0.63 -0.5
197,000 - LRK53_RS19040 0.63 -1.5
197,000 - LRK53_RS19040 0.63 -0.7
197,000 - LRK53_RS19040 0.63 -0.1
197,000 - LRK53_RS19040 0.63 -1.9
197,000 - LRK53_RS19040 0.63 -2.6
197,050 - LRK53_RS19040 0.76 -0.9
197,066 - LRK53_RS19040 0.81 -0.5
197,066 - LRK53_RS19040 0.81 -2.9
197,137 + +0.5
197,137 + +0.4
197,137 + +0.3
197,137 + +0.5
197,201 + +0.5
197,201 + -1.9
197,201 + -0.5
197,201 + +0.1
197,201 + -0.3
197,201 + -0.4
197,202 - -0.9
197,202 - -0.8
197,202 - -1.1
197,202 - -1.3
197,202 - -0.8
197,202 - -0.6
197,202 - +0.2
197,202 - -1.9
197,202 - +1.0
197,202 - -0.2
197,202 - -0.9
197,202 - -1.6
197,426 + LRK53_RS19045 0.25 -0.6
197,427 - LRK53_RS19045 0.25 -1.1
197,488 + LRK53_RS19045 0.33 -0.1
197,561 + LRK53_RS19045 0.41 -1.5
197,562 - LRK53_RS19045 0.41 -1.2
197,562 - LRK53_RS19045 0.41 +0.7
197,562 - LRK53_RS19045 0.41 -0.3
197,627 + LRK53_RS19045 0.49 -0.8
197,627 + LRK53_RS19045 0.49 -0.8
197,628 - LRK53_RS19045 0.49 -0.5
197,735 + LRK53_RS19045 0.61 -0.1
197,736 - LRK53_RS19045 0.61 -0.8
197,736 - LRK53_RS19045 0.61 -0.1
197,736 - LRK53_RS19045 0.61 -0.1
197,865 + LRK53_RS19045 0.76 -0.4
197,865 + LRK53_RS19045 0.76 -2.9
197,967 + LRK53_RS19045 0.88 +0.2
197,967 + LRK53_RS19045 0.88 -0.3
197,968 - LRK53_RS19045 0.88 -0.7
197,968 - LRK53_RS19045 0.88 -1.9
198,098 + -1.5
198,098 + -0.3
198,099 - -0.4

Or see this region's nucleotide sequence