Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18970 and LRK53_RS18975 are separated by 100 nucleotides LRK53_RS18975 and LRK53_RS18980 are separated by 176 nucleotides LRK53_RS18980 and LRK53_RS18985 are separated by 151 nucleotides LRK53_RS18985 and LRK53_RS18990 are separated by 82 nucleotides
LRK53_RS18970: LRK53_RS18970 - site-specific DNA-methyltransferase, at 186,904 to 188,163
_RS18970
LRK53_RS18975: LRK53_RS18975 - hypothetical protein, at 188,264 to 188,539
_RS18975
LRK53_RS18980: LRK53_RS18980 - hypothetical protein, at 188,716 to 189,102
_RS18980
LRK53_RS18985: LRK53_RS18985 - hypothetical protein, at 189,254 to 189,619
_RS18985
LRK53_RS18990: LRK53_RS18990 - hypothetical protein, at 189,702 to 190,061
_RS18990
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.772 kb on - strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.964 kb on - strand, within LRK53_RS18970 at 188.055 kb on + strand at 188.055 kb on + strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.077 kb on + strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.477 kb on + strand, within LRK53_RS18975 at 188.582 kb on + strand at 188.582 kb on + strand at 188.583 kb on - strand at 188.648 kb on + strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.798 kb on - strand, within LRK53_RS18980 at 188.798 kb on - strand, within LRK53_RS18980 at 188.894 kb on - strand, within LRK53_RS18980 at 188.905 kb on + strand, within LRK53_RS18980 at 189.029 kb on + strand, within LRK53_RS18980 at 189.148 kb on - strand at 189.148 kb on - strand at 189.396 kb on + strand, within LRK53_RS18985 at 189.396 kb on + strand, within LRK53_RS18985 at 189.396 kb on + strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.518 kb on + strand, within LRK53_RS18985 at 189.518 kb on + strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.754 kb on - strand, within LRK53_RS18990 at 189.754 kb on - strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.966 kb on + strand, within LRK53_RS18990 at 189.966 kb on + strand, within LRK53_RS18990 at 189.967 kb on - strand, within LRK53_RS18990 at 189.967 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 187,772 - LRK53_RS18970 0.69 -0.2 187,848 + LRK53_RS18970 0.75 +0.9 187,848 + LRK53_RS18970 0.75 -0.9 187,964 - LRK53_RS18970 0.84 +1.3 188,055 + +0.8 188,055 + +0.9 188,056 - -2.8 188,056 - -0.6 188,056 - -2.3 188,056 - -0.4 188,056 - -1.6 188,056 - -3.0 188,077 + -1.1 188,242 - +1.3 188,242 - -0.4 188,242 - -0.2 188,242 - -1.9 188,477 + LRK53_RS18975 0.77 -1.8 188,582 + +0.6 188,582 + -0.8 188,583 - -0.5 188,648 + -0.2 188,649 - -2.2 188,649 - -1.8 188,649 - -1.9 188,798 - LRK53_RS18980 0.21 +1.1 188,798 - LRK53_RS18980 0.21 +1.4 188,894 - LRK53_RS18980 0.46 -1.1 188,905 + LRK53_RS18980 0.49 +0.4 189,029 + LRK53_RS18980 0.81 -0.4 189,148 - +1.3 189,148 - +0.7 189,396 + LRK53_RS18985 0.39 -2.6 189,396 + LRK53_RS18985 0.39 -1.1 189,396 + LRK53_RS18985 0.39 -0.2 189,397 - LRK53_RS18985 0.39 -0.5 189,397 - LRK53_RS18985 0.39 -0.5 189,397 - LRK53_RS18985 0.39 +1.5 189,397 - LRK53_RS18985 0.39 +1.9 189,397 - LRK53_RS18985 0.39 -1.0 189,397 - LRK53_RS18985 0.39 -1.3 189,518 + LRK53_RS18985 0.72 -2.2 189,518 + LRK53_RS18985 0.72 -2.5 189,519 - LRK53_RS18985 0.72 -1.6 189,519 - LRK53_RS18985 0.72 +1.5 189,519 - LRK53_RS18985 0.72 -1.5 189,519 - LRK53_RS18985 0.72 -0.7 189,521 + LRK53_RS18985 0.73 -1.7 189,521 + LRK53_RS18985 0.73 -1.2 189,521 + LRK53_RS18985 0.73 +0.3 189,521 + LRK53_RS18985 0.73 +2.1 189,521 + LRK53_RS18985 0.73 +0.8 189,521 + LRK53_RS18985 0.73 +0.1 189,521 + LRK53_RS18985 0.73 -1.8 189,521 + LRK53_RS18985 0.73 -0.4 189,521 + LRK53_RS18985 0.73 -0.9 189,521 + LRK53_RS18985 0.73 -0.0 189,522 - LRK53_RS18985 0.73 -0.4 189,522 - LRK53_RS18985 0.73 +1.2 189,522 - LRK53_RS18985 0.73 -0.9 189,522 - LRK53_RS18985 0.73 -0.9 189,522 - LRK53_RS18985 0.73 -0.1 189,522 - LRK53_RS18985 0.73 -0.9 189,522 - LRK53_RS18985 0.73 +1.1 189,522 - LRK53_RS18985 0.73 +1.1 189,522 - LRK53_RS18985 0.73 -0.3 189,522 - LRK53_RS18985 0.73 +0.4 189,522 - LRK53_RS18985 0.73 -0.5 189,522 - LRK53_RS18985 0.73 -1.5 189,522 - LRK53_RS18985 0.73 -0.1 189,522 - LRK53_RS18985 0.73 -2.5 189,753 + LRK53_RS18990 0.14 -1.9 189,753 + LRK53_RS18990 0.14 -1.3 189,753 + LRK53_RS18990 0.14 -0.9 189,753 + LRK53_RS18990 0.14 +0.5 189,754 - LRK53_RS18990 0.14 -1.1 189,754 - LRK53_RS18990 0.14 +0.4 189,756 + LRK53_RS18990 0.15 -0.7 189,756 + LRK53_RS18990 0.15 -1.1 189,756 + LRK53_RS18990 0.15 -1.2 189,756 + LRK53_RS18990 0.15 +0.8 189,757 - LRK53_RS18990 0.15 +1.2 189,757 - LRK53_RS18990 0.15 -1.0 189,757 - LRK53_RS18990 0.15 +0.8 189,757 - LRK53_RS18990 0.15 -1.8 189,921 + LRK53_RS18990 0.61 +0.0 189,921 + LRK53_RS18990 0.61 +0.3 189,921 + LRK53_RS18990 0.61 -0.8 189,921 + LRK53_RS18990 0.61 -1.9 189,921 + LRK53_RS18990 0.61 -1.6 189,921 + LRK53_RS18990 0.61 -1.8 189,921 + LRK53_RS18990 0.61 -1.0 189,921 + LRK53_RS18990 0.61 +1.5 189,921 + LRK53_RS18990 0.61 +0.4 189,922 - LRK53_RS18990 0.61 -0.6 189,922 - LRK53_RS18990 0.61 -1.0 189,922 - LRK53_RS18990 0.61 -0.2 189,922 - LRK53_RS18990 0.61 +0.2 189,922 - LRK53_RS18990 0.61 +0.0 189,922 - LRK53_RS18990 0.61 -0.1 189,922 - LRK53_RS18990 0.61 +1.1 189,966 + LRK53_RS18990 0.73 -0.5 189,966 + LRK53_RS18990 0.73 -0.2 189,967 - LRK53_RS18990 0.74 -0.1 189,967 - LRK53_RS18990 0.74 -0.4 189,982 - LRK53_RS18990 0.78 -1.2 189,982 - LRK53_RS18990 0.78 +1.3 189,982 - LRK53_RS18990 0.78 -0.4 189,982 - LRK53_RS18990 0.78 -0.3 189,982 - LRK53_RS18990 0.78 -1.1 190,059 + +0.1 190,059 + +1.0 190,059 + -1.4 190,059 + +0.5 190,059 + -1.9 190,060 - +0.7 190,060 - +2.0 190,060 - -2.3 190,060 - -2.1
Or see this region's nucleotide sequence