Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotides LRK53_RS18965 and LRK53_RS18970 overlap by 4 nucleotides LRK53_RS18970 and LRK53_RS18975 are separated by 100 nucleotides LRK53_RS18975 and LRK53_RS18980 are separated by 176 nucleotides
LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130
_RS18960
LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907
_RS18965
LRK53_RS18970: LRK53_RS18970 - site-specific DNA-methyltransferase, at 186,904 to 188,163
_RS18970
LRK53_RS18975: LRK53_RS18975 - hypothetical protein, at 188,264 to 188,539
_RS18975
LRK53_RS18980: LRK53_RS18980 - hypothetical protein, at 188,716 to 189,102
_RS18980
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.921 kb on + strand, within LRK53_RS18960 at 186.065 kb on + strand, within LRK53_RS18960 at 186.128 kb on + strand at 186.128 kb on + strand at 186.129 kb on - strand at 186.129 kb on - strand at 186.193 kb on + strand at 186.284 kb on + strand, within LRK53_RS18965 at 186.284 kb on + strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.494 kb on + strand, within LRK53_RS18965 at 186.495 kb on - strand, within LRK53_RS18965 at 186.495 kb on - strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965 at 186.781 kb on - strand, within LRK53_RS18965 at 186.781 kb on - strand, within LRK53_RS18965 at 186.926 kb on + strand at 186.961 kb on + strand at 186.961 kb on + strand at 186.962 kb on - strand at 187.041 kb on + strand, within LRK53_RS18970 at 187.041 kb on + strand, within LRK53_RS18970 at 187.041 kb on + strand, within LRK53_RS18970 at 187.042 kb on - strand, within LRK53_RS18970 at 187.117 kb on - strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.384 kb on + strand, within LRK53_RS18970 at 187.385 kb on - strand, within LRK53_RS18970 at 187.385 kb on - strand, within LRK53_RS18970 at 187.504 kb on + strand, within LRK53_RS18970 at 187.504 kb on + strand, within LRK53_RS18970 at 187.504 kb on + strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.505 kb on - strand, within LRK53_RS18970 at 187.772 kb on - strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.848 kb on + strand, within LRK53_RS18970 at 187.964 kb on - strand, within LRK53_RS18970 at 188.055 kb on + strand at 188.055 kb on + strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.056 kb on - strand at 188.077 kb on + strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.242 kb on - strand at 188.477 kb on + strand, within LRK53_RS18975 at 188.582 kb on + strand at 188.582 kb on + strand at 188.583 kb on - strand at 188.648 kb on + strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.649 kb on - strand at 188.798 kb on - strand, within LRK53_RS18980 at 188.798 kb on - strand, within LRK53_RS18980 at 188.894 kb on - strand, within LRK53_RS18980 at 188.905 kb on + strand, within LRK53_RS18980 at 189.029 kb on + strand, within LRK53_RS18980 at 189.148 kb on - strand at 189.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 185,921 + LRK53_RS18960 0.26 -0.4 186,065 + LRK53_RS18960 0.77 +0.0 186,128 + -1.3 186,128 + +0.4 186,129 - -2.3 186,129 - -1.8 186,193 + +0.1 186,284 + LRK53_RS18965 0.11 +1.5 186,284 + LRK53_RS18965 0.11 -1.4 186,285 - LRK53_RS18965 0.11 -0.4 186,285 - LRK53_RS18965 0.11 +0.4 186,285 - LRK53_RS18965 0.11 +1.5 186,285 - LRK53_RS18965 0.11 -1.9 186,285 - LRK53_RS18965 0.11 -0.7 186,363 + LRK53_RS18965 0.22 -1.1 186,363 + LRK53_RS18965 0.22 -0.1 186,363 + LRK53_RS18965 0.22 -0.5 186,363 + LRK53_RS18965 0.22 -1.8 186,363 + LRK53_RS18965 0.22 -0.7 186,364 - LRK53_RS18965 0.22 -1.1 186,364 - LRK53_RS18965 0.22 -0.7 186,364 - LRK53_RS18965 0.22 -0.2 186,364 - LRK53_RS18965 0.22 -0.6 186,364 - LRK53_RS18965 0.22 -0.4 186,364 - LRK53_RS18965 0.22 +0.9 186,364 - LRK53_RS18965 0.22 +1.4 186,364 - LRK53_RS18965 0.22 -1.3 186,494 + LRK53_RS18965 0.41 -0.6 186,495 - LRK53_RS18965 0.41 -1.3 186,495 - LRK53_RS18965 0.41 -0.4 186,605 + LRK53_RS18965 0.57 -0.9 186,605 + LRK53_RS18965 0.57 +0.8 186,605 + LRK53_RS18965 0.57 -0.8 186,605 + LRK53_RS18965 0.57 -1.8 186,605 + LRK53_RS18965 0.57 -0.0 186,605 + LRK53_RS18965 0.57 -1.7 186,605 + LRK53_RS18965 0.57 -1.0 186,605 + LRK53_RS18965 0.57 -0.6 186,605 + LRK53_RS18965 0.57 +0.2 186,605 + LRK53_RS18965 0.57 -1.4 186,605 + LRK53_RS18965 0.57 -1.3 186,605 + LRK53_RS18965 0.57 +0.1 186,605 + LRK53_RS18965 0.57 -2.9 186,605 + LRK53_RS18965 0.57 -0.2 186,605 + LRK53_RS18965 0.57 -2.1 186,605 + LRK53_RS18965 0.57 +0.1 186,605 + LRK53_RS18965 0.57 -0.3 186,605 + LRK53_RS18965 0.57 +0.4 186,605 + LRK53_RS18965 0.57 +1.8 186,605 + LRK53_RS18965 0.57 +0.7 186,605 + LRK53_RS18965 0.57 -1.2 186,605 + LRK53_RS18965 0.57 -0.3 186,606 - LRK53_RS18965 0.57 -0.2 186,606 - LRK53_RS18965 0.57 -0.1 186,606 - LRK53_RS18965 0.57 -1.1 186,606 - LRK53_RS18965 0.57 +0.3 186,606 - LRK53_RS18965 0.57 +0.1 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 -0.2 186,606 - LRK53_RS18965 0.57 -0.4 186,606 - LRK53_RS18965 0.57 -0.6 186,606 - LRK53_RS18965 0.57 -0.2 186,606 - LRK53_RS18965 0.57 +0.1 186,606 - LRK53_RS18965 0.57 -0.7 186,606 - LRK53_RS18965 0.57 -0.8 186,606 - LRK53_RS18965 0.57 -1.9 186,606 - LRK53_RS18965 0.57 +0.3 186,606 - LRK53_RS18965 0.57 +0.5 186,606 - LRK53_RS18965 0.57 -1.6 186,606 - LRK53_RS18965 0.57 -0.4 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 +1.1 186,725 + LRK53_RS18965 0.74 -0.6 186,725 + LRK53_RS18965 0.74 -0.6 186,725 + LRK53_RS18965 0.74 +1.5 186,725 + LRK53_RS18965 0.74 +0.6 186,725 + LRK53_RS18965 0.74 -0.4 186,726 - LRK53_RS18965 0.74 +0.9 186,726 - LRK53_RS18965 0.74 -1.5 186,781 - LRK53_RS18965 0.82 +0.9 186,781 - LRK53_RS18965 0.82 -1.2 186,926 + -1.1 186,961 + -2.6 186,961 + -1.7 186,962 - -0.8 187,041 + LRK53_RS18970 0.11 +1.2 187,041 + LRK53_RS18970 0.11 -0.2 187,041 + LRK53_RS18970 0.11 -0.3 187,042 - LRK53_RS18970 0.11 +1.2 187,117 - LRK53_RS18970 0.17 +0.2 187,384 + LRK53_RS18970 0.38 +0.3 187,384 + LRK53_RS18970 0.38 +0.2 187,384 + LRK53_RS18970 0.38 -1.2 187,385 - LRK53_RS18970 0.38 -0.1 187,385 - LRK53_RS18970 0.38 +0.7 187,504 + LRK53_RS18970 0.48 +0.2 187,504 + LRK53_RS18970 0.48 -1.3 187,504 + LRK53_RS18970 0.48 -2.7 187,505 - LRK53_RS18970 0.48 +0.2 187,505 - LRK53_RS18970 0.48 +0.5 187,505 - LRK53_RS18970 0.48 -0.7 187,505 - LRK53_RS18970 0.48 -0.2 187,505 - LRK53_RS18970 0.48 +2.0 187,505 - LRK53_RS18970 0.48 -1.3 187,772 - LRK53_RS18970 0.69 -0.2 187,848 + LRK53_RS18970 0.75 +0.9 187,848 + LRK53_RS18970 0.75 -0.9 187,964 - LRK53_RS18970 0.84 +1.3 188,055 + +0.8 188,055 + +0.9 188,056 - -2.8 188,056 - -0.6 188,056 - -2.3 188,056 - -0.4 188,056 - -1.6 188,056 - -3.0 188,077 + -1.1 188,242 - +1.3 188,242 - -0.4 188,242 - -0.2 188,242 - -1.9 188,477 + LRK53_RS18975 0.77 -1.8 188,582 + +0.6 188,582 + -0.8 188,583 - -0.5 188,648 + -0.2 188,649 - -2.2 188,649 - -1.8 188,649 - -1.9 188,798 - LRK53_RS18980 0.21 +1.1 188,798 - LRK53_RS18980 0.21 +1.4 188,894 - LRK53_RS18980 0.46 -1.1 188,905 + LRK53_RS18980 0.49 +0.4 189,029 + LRK53_RS18980 0.81 -0.4 189,148 - +1.3 189,148 - +0.7
Or see this region's nucleotide sequence