Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18775 and LRK53_RS18780 overlap by 4 nucleotides LRK53_RS18780 and LRK53_RS18785 are separated by 2 nucleotides LRK53_RS18785 and LRK53_RS18790 are separated by 15 nucleotides
LRK53_RS18775: LRK53_RS18775 - hypothetical protein, at 144,560 to 145,018
_RS18775
LRK53_RS18780: LRK53_RS18780 - hypothetical protein, at 145,015 to 145,809
_RS18780
LRK53_RS18785: LRK53_RS18785 - conjugal transfer protein TraN, at 145,812 to 147,209
_RS18785
LRK53_RS18790: LRK53_RS18790 - hypothetical protein, at 147,225 to 150,614
_RS18790
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.834 kb on + strand, within LRK53_RS18775 at 144.834 kb on + strand, within LRK53_RS18775 at 144.834 kb on + strand, within LRK53_RS18775 at 144.834 kb on + strand, within LRK53_RS18775 at 144.834 kb on + strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.835 kb on - strand, within LRK53_RS18775 at 144.869 kb on + strand, within LRK53_RS18775 at 144.927 kb on - strand, within LRK53_RS18775 at 145.148 kb on + strand, within LRK53_RS18780 at 145.148 kb on + strand, within LRK53_RS18780 at 145.149 kb on - strand, within LRK53_RS18780 at 145.277 kb on + strand, within LRK53_RS18780 at 145.349 kb on + strand, within LRK53_RS18780 at 145.349 kb on + strand, within LRK53_RS18780 at 145.380 kb on + strand, within LRK53_RS18780 at 145.406 kb on + strand, within LRK53_RS18780 at 145.406 kb on + strand, within LRK53_RS18780 at 145.406 kb on + strand, within LRK53_RS18780 at 145.406 kb on + strand, within LRK53_RS18780 at 145.406 kb on + strand, within LRK53_RS18780 at 145.407 kb on - strand, within LRK53_RS18780 at 145.523 kb on + strand, within LRK53_RS18780 at 145.523 kb on + strand, within LRK53_RS18780 at 145.523 kb on + strand, within LRK53_RS18780 at 145.523 kb on + strand, within LRK53_RS18780 at 145.524 kb on - strand, within LRK53_RS18780 at 145.524 kb on - strand, within LRK53_RS18780 at 145.847 kb on + strand at 145.847 kb on + strand at 145.847 kb on + strand at 145.847 kb on + strand at 145.848 kb on - strand at 145.849 kb on + strand at 145.850 kb on - strand at 145.975 kb on + strand, within LRK53_RS18785 at 145.999 kb on + strand, within LRK53_RS18785 at 145.999 kb on + strand, within LRK53_RS18785 at 146.000 kb on - strand, within LRK53_RS18785 at 146.000 kb on - strand, within LRK53_RS18785 at 146.113 kb on + strand, within LRK53_RS18785 at 146.113 kb on + strand, within LRK53_RS18785 at 146.114 kb on - strand, within LRK53_RS18785 at 146.284 kb on + strand, within LRK53_RS18785 at 146.284 kb on + strand, within LRK53_RS18785 at 146.284 kb on + strand, within LRK53_RS18785 at 146.285 kb on - strand, within LRK53_RS18785 at 146.285 kb on - strand, within LRK53_RS18785 at 146.285 kb on - strand, within LRK53_RS18785 at 146.285 kb on - strand, within LRK53_RS18785 at 146.285 kb on - strand, within LRK53_RS18785 at 146.305 kb on + strand, within LRK53_RS18785 at 146.305 kb on + strand, within LRK53_RS18785 at 146.306 kb on - strand, within LRK53_RS18785 at 146.306 kb on - strand, within LRK53_RS18785 at 146.306 kb on - strand, within LRK53_RS18785 at 146.516 kb on + strand, within LRK53_RS18785 at 146.517 kb on - strand, within LRK53_RS18785 at 146.517 kb on - strand, within LRK53_RS18785 at 146.536 kb on + strand, within LRK53_RS18785 at 146.536 kb on + strand, within LRK53_RS18785 at 146.536 kb on + strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.537 kb on - strand, within LRK53_RS18785 at 146.596 kb on + strand, within LRK53_RS18785 at 146.596 kb on + strand, within LRK53_RS18785 at 146.653 kb on + strand, within LRK53_RS18785 at 147.145 kb on + strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.146 kb on - strand at 147.165 kb on + strand at 147.215 kb on + strand at 147.215 kb on + strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.216 kb on - strand at 147.226 kb on + strand at 147.272 kb on + strand at 147.272 kb on + strand at 147.272 kb on + strand at 147.273 kb on - strand at 147.273 kb on - strand at 147.313 kb on + strand at 147.313 kb on + strand at 147.313 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.420 kb on + strand at 147.499 kb on + strand at 147.499 kb on + strand at 147.499 kb on + strand at 147.499 kb on + strand at 147.712 kb on + strand, within LRK53_RS18790 at 147.838 kb on + strand, within LRK53_RS18790 at 147.838 kb on + strand, within LRK53_RS18790 at 147.839 kb on - strand, within LRK53_RS18790 at 147.901 kb on + strand, within LRK53_RS18790 at 147.941 kb on + strand, within LRK53_RS18790 at 147.941 kb on + strand, within LRK53_RS18790 at 147.941 kb on + strand, within LRK53_RS18790 at 147.942 kb on - strand, within LRK53_RS18790 at 147.942 kb on - strand, within LRK53_RS18790 at 147.942 kb on - strand, within LRK53_RS18790 at 147.942 kb on - strand, within LRK53_RS18790 at 148.012 kb on + strand, within LRK53_RS18790 at 148.012 kb on + strand, within LRK53_RS18790 at 148.013 kb on - strand, within LRK53_RS18790 at 148.081 kb on + strand, within LRK53_RS18790 at 148.081 kb on + strand, within LRK53_RS18790 at 148.081 kb on + strand, within LRK53_RS18790 at 148.081 kb on + strand, within LRK53_RS18790 at 148.082 kb on - strand, within LRK53_RS18790 at 148.082 kb on - strand, within LRK53_RS18790 at 148.098 kb on - strand, within LRK53_RS18790 at 148.165 kb on + strand, within LRK53_RS18790 at 148.165 kb on + strand, within LRK53_RS18790 at 148.166 kb on - strand, within LRK53_RS18790 at 148.166 kb on - strand, within LRK53_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 144,834 + LRK53_RS18775 0.60 -1.4 144,834 + LRK53_RS18775 0.60 -1.5 144,834 + LRK53_RS18775 0.60 -1.3 144,834 + LRK53_RS18775 0.60 -0.3 144,834 + LRK53_RS18775 0.60 -1.2 144,835 - LRK53_RS18775 0.60 -0.1 144,835 - LRK53_RS18775 0.60 +1.5 144,835 - LRK53_RS18775 0.60 -0.6 144,835 - LRK53_RS18775 0.60 -0.6 144,835 - LRK53_RS18775 0.60 +0.4 144,835 - LRK53_RS18775 0.60 -1.8 144,835 - LRK53_RS18775 0.60 -0.4 144,835 - LRK53_RS18775 0.60 -1.1 144,869 + LRK53_RS18775 0.67 +0.1 144,927 - LRK53_RS18775 0.80 -0.1 145,148 + LRK53_RS18780 0.17 +1.8 145,148 + LRK53_RS18780 0.17 -0.5 145,149 - LRK53_RS18780 0.17 -1.4 145,277 + LRK53_RS18780 0.33 -2.7 145,349 + LRK53_RS18780 0.42 -0.3 145,349 + LRK53_RS18780 0.42 -0.9 145,380 + LRK53_RS18780 0.46 -0.6 145,406 + LRK53_RS18780 0.49 -0.5 145,406 + LRK53_RS18780 0.49 -2.8 145,406 + LRK53_RS18780 0.49 +2.1 145,406 + LRK53_RS18780 0.49 -0.5 145,406 + LRK53_RS18780 0.49 +1.0 145,407 - LRK53_RS18780 0.49 -0.7 145,523 + LRK53_RS18780 0.64 +0.2 145,523 + LRK53_RS18780 0.64 -1.1 145,523 + LRK53_RS18780 0.64 -1.8 145,523 + LRK53_RS18780 0.64 -1.2 145,524 - LRK53_RS18780 0.64 +0.9 145,524 - LRK53_RS18780 0.64 +0.1 145,847 + +0.6 145,847 + +0.1 145,847 + -1.3 145,847 + -1.5 145,848 - -1.8 145,849 + +0.2 145,850 - +0.5 145,975 + LRK53_RS18785 0.12 +0.2 145,999 + LRK53_RS18785 0.13 +0.7 145,999 + LRK53_RS18785 0.13 +2.5 146,000 - LRK53_RS18785 0.13 +0.3 146,000 - LRK53_RS18785 0.13 -1.5 146,113 + LRK53_RS18785 0.22 -0.6 146,113 + LRK53_RS18785 0.22 -0.8 146,114 - LRK53_RS18785 0.22 -0.5 146,284 + LRK53_RS18785 0.34 -1.4 146,284 + LRK53_RS18785 0.34 +0.3 146,284 + LRK53_RS18785 0.34 +0.5 146,285 - LRK53_RS18785 0.34 +0.5 146,285 - LRK53_RS18785 0.34 -1.7 146,285 - LRK53_RS18785 0.34 +0.8 146,285 - LRK53_RS18785 0.34 -0.5 146,285 - LRK53_RS18785 0.34 -1.1 146,305 + LRK53_RS18785 0.35 +0.6 146,305 + LRK53_RS18785 0.35 +0.3 146,306 - LRK53_RS18785 0.35 -0.8 146,306 - LRK53_RS18785 0.35 -0.7 146,306 - LRK53_RS18785 0.35 +1.5 146,516 + LRK53_RS18785 0.50 -0.5 146,517 - LRK53_RS18785 0.50 -0.9 146,517 - LRK53_RS18785 0.50 -0.8 146,536 + LRK53_RS18785 0.52 +0.7 146,536 + LRK53_RS18785 0.52 -0.3 146,536 + LRK53_RS18785 0.52 -2.1 146,537 - LRK53_RS18785 0.52 -0.5 146,537 - LRK53_RS18785 0.52 -0.4 146,537 - LRK53_RS18785 0.52 -0.7 146,537 - LRK53_RS18785 0.52 -1.3 146,537 - LRK53_RS18785 0.52 -1.3 146,537 - LRK53_RS18785 0.52 -0.5 146,537 - LRK53_RS18785 0.52 +2.0 146,537 - LRK53_RS18785 0.52 +1.2 146,596 + LRK53_RS18785 0.56 +0.4 146,596 + LRK53_RS18785 0.56 -0.1 146,653 + LRK53_RS18785 0.60 -0.5 147,145 + -0.2 147,146 - -1.9 147,146 - +1.2 147,146 - -1.9 147,165 + -2.3 147,215 + -2.3 147,215 + +0.1 147,216 - -0.1 147,216 - +0.9 147,216 - +0.8 147,216 - +0.3 147,216 - -0.8 147,216 - +0.2 147,216 - -0.3 147,226 + -0.2 147,272 + -0.3 147,272 + -0.2 147,272 + -0.3 147,273 - -0.1 147,273 - +0.3 147,313 + -0.0 147,313 + -1.7 147,313 + -1.3 147,376 + -2.1 147,376 + -0.6 147,376 + -0.6 147,377 - +0.3 147,377 - -0.3 147,420 + +0.5 147,499 + +1.1 147,499 + -0.1 147,499 + +0.7 147,499 + +0.3 147,712 + LRK53_RS18790 0.14 -2.3 147,838 + LRK53_RS18790 0.18 -1.5 147,838 + LRK53_RS18790 0.18 +0.5 147,839 - LRK53_RS18790 0.18 -2.5 147,901 + LRK53_RS18790 0.20 +0.6 147,941 + LRK53_RS18790 0.21 -1.5 147,941 + LRK53_RS18790 0.21 -0.1 147,941 + LRK53_RS18790 0.21 -0.4 147,942 - LRK53_RS18790 0.21 -0.1 147,942 - LRK53_RS18790 0.21 +1.7 147,942 - LRK53_RS18790 0.21 -1.8 147,942 - LRK53_RS18790 0.21 -0.0 148,012 + LRK53_RS18790 0.23 +0.2 148,012 + LRK53_RS18790 0.23 -1.1 148,013 - LRK53_RS18790 0.23 -1.7 148,081 + LRK53_RS18790 0.25 -1.7 148,081 + LRK53_RS18790 0.25 -0.7 148,081 + LRK53_RS18790 0.25 +0.1 148,081 + LRK53_RS18790 0.25 +0.7 148,082 - LRK53_RS18790 0.25 -1.1 148,082 - LRK53_RS18790 0.25 -0.4 148,098 - LRK53_RS18790 0.26 +0.8 148,165 + LRK53_RS18790 0.28 -0.8 148,165 + LRK53_RS18790 0.28 +0.7 148,166 - LRK53_RS18790 0.28 +0.9 148,166 - LRK53_RS18790 0.28 -0.1
Or see this region's nucleotide sequence