Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18600

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18590 and LRK53_RS18595 are separated by 357 nucleotidesLRK53_RS18595 and LRK53_RS18600 are separated by 89 nucleotidesLRK53_RS18600 and LRK53_RS18605 are separated by 84 nucleotides LRK53_RS18590: LRK53_RS18590 - Tn3 family transposase, at 97,402 to 100,395 _RS18590 LRK53_RS18595: LRK53_RS18595 - GtrA family protein, at 100,753 to 101,154 _RS18595 LRK53_RS18600: LRK53_RS18600 - MFS transporter, at 101,244 to 102,425 _RS18600 LRK53_RS18605: LRK53_RS18605 - HAMP domain-containing histidine kinase, at 102,510 to 103,718 _RS18605 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1at 100.633 kb on + strandat 100.633 kb on + strandat 100.634 kb on - strandat 100.634 kb on - strandat 100.653 kb on + strandat 100.677 kb on + strandat 100.718 kb on - strandat 100.755 kb on - strandat 100.784 kb on - strandat 100.828 kb on + strand, within LRK53_RS18595at 100.828 kb on + strand, within LRK53_RS18595at 100.828 kb on + strand, within LRK53_RS18595at 100.829 kb on - strand, within LRK53_RS18595at 100.913 kb on + strand, within LRK53_RS18595at 100.914 kb on - strand, within LRK53_RS18595at 100.941 kb on + strand, within LRK53_RS18595at 100.941 kb on + strand, within LRK53_RS18595at 100.996 kb on + strand, within LRK53_RS18595at 101.042 kb on + strand, within LRK53_RS18595at 101.069 kb on + strand, within LRK53_RS18595at 101.069 kb on + strand, within LRK53_RS18595at 101.069 kb on + strand, within LRK53_RS18595at 101.075 kb on - strand, within LRK53_RS18595at 101.162 kb on + strandat 101.162 kb on + strandat 101.163 kb on - strandat 101.163 kb on - strandat 101.163 kb on - strandat 101.225 kb on + strandat 101.225 kb on + strandat 101.226 kb on - strandat 101.226 kb on - strandat 101.250 kb on - strandat 101.289 kb on + strandat 101.290 kb on - strandat 101.290 kb on - strandat 101.392 kb on - strand, within LRK53_RS18600at 101.503 kb on + strand, within LRK53_RS18600at 101.503 kb on + strand, within LRK53_RS18600at 101.504 kb on - strand, within LRK53_RS18600at 101.534 kb on + strand, within LRK53_RS18600at 101.534 kb on + strand, within LRK53_RS18600at 101.535 kb on - strand, within LRK53_RS18600at 101.572 kb on + strand, within LRK53_RS18600at 101.572 kb on + strand, within LRK53_RS18600at 101.696 kb on + strand, within LRK53_RS18600at 101.697 kb on - strand, within LRK53_RS18600at 101.703 kb on - strand, within LRK53_RS18600at 101.721 kb on + strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.722 kb on - strand, within LRK53_RS18600at 101.995 kb on + strand, within LRK53_RS18600at 101.995 kb on + strand, within LRK53_RS18600at 101.995 kb on + strand, within LRK53_RS18600at 102.019 kb on + strand, within LRK53_RS18600at 102.019 kb on + strand, within LRK53_RS18600at 102.020 kb on - strand, within LRK53_RS18600at 102.181 kb on + strand, within LRK53_RS18600at 102.181 kb on + strand, within LRK53_RS18600at 102.182 kb on - strand, within LRK53_RS18600at 102.456 kb on + strandat 102.458 kb on + strandat 102.458 kb on + strandat 102.458 kb on + strandat 102.458 kb on + strandat 102.458 kb on + strandat 102.459 kb on - strandat 102.459 kb on - strandat 102.478 kb on + strandat 102.479 kb on - strandat 102.479 kb on - strandat 102.479 kb on - strandat 102.718 kb on - strand, within LRK53_RS18605at 102.718 kb on - strand, within LRK53_RS18605at 102.760 kb on - strand, within LRK53_RS18605at 102.953 kb on + strand, within LRK53_RS18605at 102.954 kb on - strand, within LRK53_RS18605at 103.023 kb on + strand, within LRK53_RS18605at 103.024 kb on - strand, within LRK53_RS18605at 103.319 kb on + strand, within LRK53_RS18605at 103.319 kb on + strand, within LRK53_RS18605at 103.319 kb on + strand, within LRK53_RS18605at 103.319 kb on + strand, within LRK53_RS18605at 103.319 kb on + strand, within LRK53_RS18605at 103.320 kb on - strand, within LRK53_RS18605at 103.320 kb on - strand, within LRK53_RS18605at 103.320 kb on - strand, within LRK53_RS18605at 103.320 kb on - strand, within LRK53_RS18605at 103.323 kb on + strand, within LRK53_RS18605at 103.323 kb on + strand, within LRK53_RS18605at 103.323 kb on + strand, within LRK53_RS18605at 103.399 kb on + strand, within LRK53_RS18605at 103.399 kb on + strand, within LRK53_RS18605at 103.399 kb on + strand, within LRK53_RS18605at 103.400 kb on - strand, within LRK53_RS18605at 103.400 kb on - strand, within LRK53_RS18605at 103.400 kb on - strand, within LRK53_RS18605

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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100,633 + +0.2
100,633 + +1.0
100,634 - -1.7
100,634 - +0.6
100,653 + +0.3
100,677 + +0.6
100,718 - -0.2
100,755 - +0.4
100,784 - -0.4
100,828 + LRK53_RS18595 0.19 -2.1
100,828 + LRK53_RS18595 0.19 -0.9
100,828 + LRK53_RS18595 0.19 -1.9
100,829 - LRK53_RS18595 0.19 -1.5
100,913 + LRK53_RS18595 0.40 -0.1
100,914 - LRK53_RS18595 0.40 +0.2
100,941 + LRK53_RS18595 0.47 +0.2
100,941 + LRK53_RS18595 0.47 -0.5
100,996 + LRK53_RS18595 0.60 -1.9
101,042 + LRK53_RS18595 0.72 -0.7
101,069 + LRK53_RS18595 0.79 -0.1
101,069 + LRK53_RS18595 0.79 +0.1
101,069 + LRK53_RS18595 0.79 -2.1
101,075 - LRK53_RS18595 0.80 -1.3
101,162 + -0.4
101,162 + -0.2
101,163 - -0.4
101,163 - -1.1
101,163 - +0.8
101,225 + -0.4
101,225 + -0.8
101,226 - -1.5
101,226 - +0.1
101,250 - -0.4
101,289 + +0.5
101,290 - -0.3
101,290 - -1.0
101,392 - LRK53_RS18600 0.13 -0.4
101,503 + LRK53_RS18600 0.22 -0.3
101,503 + LRK53_RS18600 0.22 +0.4
101,504 - LRK53_RS18600 0.22 +0.1
101,534 + LRK53_RS18600 0.25 -1.6
101,534 + LRK53_RS18600 0.25 +1.0
101,535 - LRK53_RS18600 0.25 +0.2
101,572 + LRK53_RS18600 0.28 -0.5
101,572 + LRK53_RS18600 0.28 -0.3
101,696 + LRK53_RS18600 0.38 -0.1
101,697 - LRK53_RS18600 0.38 -1.1
101,703 - LRK53_RS18600 0.39 +1.5
101,721 + LRK53_RS18600 0.40 -1.5
101,722 - LRK53_RS18600 0.40 -0.3
101,722 - LRK53_RS18600 0.40 +0.7
101,722 - LRK53_RS18600 0.40 +0.3
101,722 - LRK53_RS18600 0.40 +0.7
101,722 - LRK53_RS18600 0.40 -0.2
101,722 - LRK53_RS18600 0.40 -2.2
101,995 + LRK53_RS18600 0.64 -2.4
101,995 + LRK53_RS18600 0.64 +1.5
101,995 + LRK53_RS18600 0.64 -1.7
102,019 + LRK53_RS18600 0.66 -1.5
102,019 + LRK53_RS18600 0.66 +1.5
102,020 - LRK53_RS18600 0.66 -0.4
102,181 + LRK53_RS18600 0.79 +0.1
102,181 + LRK53_RS18600 0.79 +0.3
102,182 - LRK53_RS18600 0.79 +0.1
102,456 + -0.4
102,458 + +0.9
102,458 + -0.9
102,458 + -0.5
102,458 + -2.7
102,458 + +0.8
102,459 - -0.6
102,459 - +1.0
102,478 + -0.9
102,479 - +0.1
102,479 - +1.5
102,479 - -1.7
102,718 - LRK53_RS18605 0.17 -0.7
102,718 - LRK53_RS18605 0.17 +0.7
102,760 - LRK53_RS18605 0.21 +0.8
102,953 + LRK53_RS18605 0.37 -0.7
102,954 - LRK53_RS18605 0.37 -2.4
103,023 + LRK53_RS18605 0.42 -0.1
103,024 - LRK53_RS18605 0.43 -0.5
103,319 + LRK53_RS18605 0.67 -1.3
103,319 + LRK53_RS18605 0.67 -1.5
103,319 + LRK53_RS18605 0.67 -0.7
103,319 + LRK53_RS18605 0.67 +1.2
103,319 + LRK53_RS18605 0.67 -1.9
103,320 - LRK53_RS18605 0.67 -1.8
103,320 - LRK53_RS18605 0.67 -1.1
103,320 - LRK53_RS18605 0.67 -0.7
103,320 - LRK53_RS18605 0.67 -1.9
103,323 + LRK53_RS18605 0.67 -0.7
103,323 + LRK53_RS18605 0.67 -1.1
103,323 + LRK53_RS18605 0.67 -0.8
103,399 + LRK53_RS18605 0.74 +0.7
103,399 + LRK53_RS18605 0.74 -0.9
103,399 + LRK53_RS18605 0.74 +0.9
103,400 - LRK53_RS18605 0.74 -0.2
103,400 - LRK53_RS18605 0.74 -1.1
103,400 - LRK53_RS18605 0.74 -2.2

Or see this region's nucleotide sequence