Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18275 and LRK53_RS18280 are separated by 32 nucleotides LRK53_RS18280 and LRK53_RS18285 are separated by 715 nucleotides
LRK53_RS18275: LRK53_RS18275 - UvrD-helicase domain-containing protein, at 32,614 to 33,210
_RS18275
LRK53_RS18280: LRK53_RS18280 - hypothetical protein, at 33,243 to 33,995
_RS18280
LRK53_RS18285: LRK53_RS18285 - hypothetical protein, at 34,711 to 34,926
_RS18285
Position (kb) 33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.477 kb on + strand at 32.477 kb on + strand at 32.477 kb on + strand at 32.477 kb on + strand at 32.541 kb on - strand at 32.564 kb on + strand at 32.564 kb on + strand at 32.565 kb on - strand at 32.565 kb on - strand at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.678 kb on + strand, within LRK53_RS18275 at 32.679 kb on - strand, within LRK53_RS18275 at 32.679 kb on - strand, within LRK53_RS18275 at 32.679 kb on - strand, within LRK53_RS18275 at 32.679 kb on - strand, within LRK53_RS18275 at 32.691 kb on - strand, within LRK53_RS18275 at 32.793 kb on - strand, within LRK53_RS18275 at 32.793 kb on - strand, within LRK53_RS18275 at 32.905 kb on + strand, within LRK53_RS18275 at 32.905 kb on + strand, within LRK53_RS18275 at 32.905 kb on + strand, within LRK53_RS18275 at 32.906 kb on - strand, within LRK53_RS18275 at 32.906 kb on - strand, within LRK53_RS18275 at 32.906 kb on - strand, within LRK53_RS18275 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.416 kb on - strand, within LRK53_RS18280 at 33.535 kb on + strand, within LRK53_RS18280 at 33.536 kb on - strand, within LRK53_RS18280 at 33.536 kb on - strand, within LRK53_RS18280 at 33.575 kb on + strand, within LRK53_RS18280 at 33.576 kb on - strand, within LRK53_RS18280 at 33.576 kb on - strand, within LRK53_RS18280 at 33.576 kb on - strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.577 kb on + strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.578 kb on - strand, within LRK53_RS18280 at 33.760 kb on + strand, within LRK53_RS18280 at 33.769 kb on + strand, within LRK53_RS18280 at 33.769 kb on + strand, within LRK53_RS18280 at 33.805 kb on + strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 34.017 kb on - strand at 34.068 kb on + strand at 34.149 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.216 kb on + strand at 34.217 kb on - strand at 34.254 kb on + strand at 34.255 kb on - strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.618 kb on + strand at 34.619 kb on - strand at 34.619 kb on - strand at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.815 kb on + strand, within LRK53_RS18285 at 34.816 kb on - strand, within LRK53_RS18285 at 34.816 kb on - strand, within LRK53_RS18285 at 34.816 kb on - strand, within LRK53_RS18285 at 34.840 kb on + strand, within LRK53_RS18285 at 34.864 kb on - strand, within LRK53_RS18285
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 32,477 + +0.5 32,477 + +1.5 32,477 + +0.1 32,477 + -0.8 32,541 - -0.4 32,564 + +0.8 32,564 + -0.5 32,565 - +1.5 32,565 - -0.6 32,678 + LRK53_RS18275 0.11 -0.4 32,678 + LRK53_RS18275 0.11 -2.4 32,678 + LRK53_RS18275 0.11 +0.9 32,678 + LRK53_RS18275 0.11 -2.6 32,678 + LRK53_RS18275 0.11 +0.3 32,678 + LRK53_RS18275 0.11 -1.5 32,678 + LRK53_RS18275 0.11 -2.3 32,679 - LRK53_RS18275 0.11 -1.0 32,679 - LRK53_RS18275 0.11 -1.2 32,679 - LRK53_RS18275 0.11 -1.5 32,679 - LRK53_RS18275 0.11 +0.1 32,691 - LRK53_RS18275 0.13 +0.4 32,793 - LRK53_RS18275 0.30 -1.1 32,793 - LRK53_RS18275 0.30 -0.7 32,905 + LRK53_RS18275 0.49 +1.5 32,905 + LRK53_RS18275 0.49 -1.5 32,905 + LRK53_RS18275 0.49 +0.2 32,906 - LRK53_RS18275 0.49 -1.3 32,906 - LRK53_RS18275 0.49 +1.1 32,906 - LRK53_RS18275 0.49 -0.5 33,416 - LRK53_RS18280 0.23 -0.5 33,416 - LRK53_RS18280 0.23 -1.9 33,416 - LRK53_RS18280 0.23 +0.8 33,416 - LRK53_RS18280 0.23 -1.7 33,416 - LRK53_RS18280 0.23 -2.4 33,416 - LRK53_RS18280 0.23 -1.8 33,416 - LRK53_RS18280 0.23 -0.8 33,535 + LRK53_RS18280 0.39 +0.7 33,536 - LRK53_RS18280 0.39 +0.0 33,536 - LRK53_RS18280 0.39 -0.1 33,575 + LRK53_RS18280 0.44 -0.2 33,576 - LRK53_RS18280 0.44 -1.3 33,576 - LRK53_RS18280 0.44 -2.2 33,576 - LRK53_RS18280 0.44 +0.5 33,577 + LRK53_RS18280 0.44 +0.8 33,577 + LRK53_RS18280 0.44 -1.3 33,577 + LRK53_RS18280 0.44 +0.1 33,577 + LRK53_RS18280 0.44 -0.8 33,577 + LRK53_RS18280 0.44 -0.4 33,577 + LRK53_RS18280 0.44 -2.1 33,577 + LRK53_RS18280 0.44 -0.5 33,577 + LRK53_RS18280 0.44 +0.5 33,577 + LRK53_RS18280 0.44 -0.2 33,577 + LRK53_RS18280 0.44 +0.5 33,577 + LRK53_RS18280 0.44 +0.9 33,577 + LRK53_RS18280 0.44 +0.3 33,577 + LRK53_RS18280 0.44 -1.3 33,577 + LRK53_RS18280 0.44 -0.3 33,577 + LRK53_RS18280 0.44 -0.3 33,577 + LRK53_RS18280 0.44 +2.3 33,577 + LRK53_RS18280 0.44 +0.7 33,578 - LRK53_RS18280 0.44 -0.9 33,578 - LRK53_RS18280 0.44 -0.5 33,578 - LRK53_RS18280 0.44 +0.5 33,578 - LRK53_RS18280 0.44 -1.1 33,578 - LRK53_RS18280 0.44 +1.4 33,578 - LRK53_RS18280 0.44 +2.7 33,578 - LRK53_RS18280 0.44 +0.8 33,578 - LRK53_RS18280 0.44 +0.8 33,578 - LRK53_RS18280 0.44 -0.3 33,578 - LRK53_RS18280 0.44 +0.5 33,578 - LRK53_RS18280 0.44 -0.8 33,578 - LRK53_RS18280 0.44 -0.5 33,578 - LRK53_RS18280 0.44 -1.6 33,578 - LRK53_RS18280 0.44 -0.8 33,578 - LRK53_RS18280 0.44 -1.3 33,578 - LRK53_RS18280 0.44 -1.9 33,760 + LRK53_RS18280 0.69 -0.4 33,769 + LRK53_RS18280 0.70 +0.5 33,769 + LRK53_RS18280 0.70 -0.9 33,805 + LRK53_RS18280 0.75 -2.1 33,806 - LRK53_RS18280 0.75 -0.2 33,806 - LRK53_RS18280 0.75 -1.7 33,806 - LRK53_RS18280 0.75 +1.7 33,811 + LRK53_RS18280 0.75 -1.1 33,811 + LRK53_RS18280 0.75 +0.2 33,811 + LRK53_RS18280 0.75 -1.2 33,812 - LRK53_RS18280 0.76 -0.8 33,812 - LRK53_RS18280 0.76 -0.1 33,812 - LRK53_RS18280 0.76 -2.4 33,812 - LRK53_RS18280 0.76 -0.9 33,845 - LRK53_RS18280 0.80 -1.9 33,845 - LRK53_RS18280 0.80 -0.8 33,845 - LRK53_RS18280 0.80 -0.8 33,845 - LRK53_RS18280 0.80 -1.0 33,845 - LRK53_RS18280 0.80 +0.1 34,017 - +2.2 34,068 + +0.9 34,149 - +0.1 34,194 + +0.5 34,194 + -0.7 34,216 + +0.3 34,217 - -0.1 34,254 + -0.8 34,255 - -0.1 34,351 + -0.6 34,351 + -1.7 34,351 + -0.1 34,351 + -0.5 34,351 + -0.5 34,351 + -0.5 34,351 + -2.5 34,351 + -2.5 34,351 + +0.3 34,351 + +0.7 34,351 + -1.6 34,351 + +0.5 34,351 + -0.9 34,351 + -1.7 34,351 + -0.4 34,351 + +1.1 34,352 - +0.0 34,352 - -0.2 34,352 - -1.1 34,352 - -1.4 34,352 - -0.3 34,352 - +0.8 34,352 - +1.2 34,352 - +0.3 34,352 - +2.1 34,352 - -0.8 34,352 - -0.4 34,352 - +1.5 34,352 - -1.7 34,352 - +0.2 34,352 - +0.7 34,352 - -2.3 34,402 + +0.3 34,402 + +0.2 34,402 + -0.2 34,402 + -0.3 34,402 + -2.1 34,402 + -0.3 34,402 + +1.7 34,402 + -1.3 34,402 + -0.4 34,402 + -1.7 34,402 + -1.5 34,402 + -0.2 34,402 + -0.4 34,402 + +1.1 34,402 + -0.8 34,402 + +0.5 34,402 + +1.1 34,402 + -1.7 34,402 + +0.2 34,402 + -0.0 34,402 + -1.5 34,403 - -0.4 34,403 - -1.8 34,403 - +1.1 34,403 - +0.0 34,403 - -1.6 34,403 - +0.5 34,403 - -0.1 34,403 - -0.1 34,403 - -2.2 34,403 - -0.6 34,618 + -0.6 34,619 - -1.8 34,619 - -1.7 34,772 - LRK53_RS18285 0.28 -0.2 34,772 - LRK53_RS18285 0.28 +0.1 34,772 - LRK53_RS18285 0.28 +0.3 34,815 + LRK53_RS18285 0.48 -0.6 34,816 - LRK53_RS18285 0.49 -0.5 34,816 - LRK53_RS18285 0.49 -2.4 34,816 - LRK53_RS18285 0.49 +0.2 34,840 + LRK53_RS18285 0.60 +0.5 34,864 - LRK53_RS18285 0.71 +0.3
Or see this region's nucleotide sequence