Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18200 and LRK53_RS18205 overlap by 4 nucleotides LRK53_RS18205 and LRK53_RS18210 overlap by 1 nucleotides LRK53_RS18210 and LRK53_RS18215 are separated by 252 nucleotides LRK53_RS18215 and LRK53_RS18220 are separated by 73 nucleotides
LRK53_RS18200: LRK53_RS18200 - PRTRC system protein B, at 16,823 to 17,578
_RS18200
LRK53_RS18205: LRK53_RS18205 - PRTRC system protein A, at 17,575 to 18,195
_RS18205
LRK53_RS18210: LRK53_RS18210 - PRTRC system ThiF family protein, at 18,195 to 19,004
_RS18210
LRK53_RS18215: LRK53_RS18215 - single-stranded DNA-binding protein, at 19,257 to 19,847
_RS18215
LRK53_RS18220: LRK53_RS18220 - hypothetical protein, at 19,921 to 20,070
_RS18220
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.306 kb on + strand, within LRK53_RS18200 at 17.306 kb on + strand, within LRK53_RS18200 at 17.514 kb on - strand at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.708 kb on - strand, within LRK53_RS18205 at 17.708 kb on - strand, within LRK53_RS18205 at 17.873 kb on + strand, within LRK53_RS18205 at 17.874 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.070 kb on + strand, within LRK53_RS18205 at 18.405 kb on + strand, within LRK53_RS18210 at 18.405 kb on + strand, within LRK53_RS18210 at 18.406 kb on - strand, within LRK53_RS18210 at 18.496 kb on - strand, within LRK53_RS18210 at 18.717 kb on + strand, within LRK53_RS18210 at 18.882 kb on + strand, within LRK53_RS18210 at 18.882 kb on + strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.957 kb on + strand at 18.957 kb on + strand at 18.958 kb on - strand at 19.049 kb on - strand at 19.049 kb on - strand at 19.231 kb on + strand at 19.231 kb on + strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.232 kb on - strand at 19.238 kb on + strand at 19.239 kb on - strand at 19.239 kb on - strand at 19.256 kb on + strand at 19.256 kb on + strand at 19.256 kb on + strand at 19.257 kb on - strand at 19.286 kb on + strand at 19.286 kb on + strand at 19.286 kb on + strand at 19.287 kb on - strand at 19.287 kb on - strand at 19.467 kb on + strand, within LRK53_RS18215 at 19.467 kb on + strand, within LRK53_RS18215 at 19.468 kb on - strand, within LRK53_RS18215 at 19.468 kb on - strand, within LRK53_RS18215 at 19.468 kb on - strand, within LRK53_RS18215 at 19.491 kb on + strand, within LRK53_RS18215 at 19.492 kb on - strand, within LRK53_RS18215 at 19.492 kb on - strand, within LRK53_RS18215 at 19.521 kb on + strand, within LRK53_RS18215 at 19.521 kb on + strand, within LRK53_RS18215 at 19.521 kb on + strand, within LRK53_RS18215 at 19.521 kb on + strand, within LRK53_RS18215 at 19.521 kb on + strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.522 kb on - strand, within LRK53_RS18215 at 19.723 kb on - strand, within LRK53_RS18215 at 19.835 kb on + strand at 19.836 kb on - strand at 19.836 kb on - strand at 19.838 kb on - strand at 19.845 kb on + strand at 19.869 kb on - strand at 19.869 kb on - strand at 19.870 kb on + strand at 19.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 17,208 + LRK53_RS18200 0.51 -2.1 17,208 + LRK53_RS18200 0.51 +0.5 17,208 + LRK53_RS18200 0.51 -1.3 17,208 + LRK53_RS18200 0.51 -0.3 17,208 + LRK53_RS18200 0.51 +0.1 17,208 + LRK53_RS18200 0.51 -2.4 17,208 + LRK53_RS18200 0.51 -1.9 17,208 + LRK53_RS18200 0.51 +1.7 17,208 + LRK53_RS18200 0.51 -0.1 17,208 + LRK53_RS18200 0.51 -0.9 17,208 + LRK53_RS18200 0.51 -0.8 17,208 + LRK53_RS18200 0.51 +1.0 17,208 + LRK53_RS18200 0.51 +0.6 17,209 - LRK53_RS18200 0.51 +1.5 17,209 - LRK53_RS18200 0.51 +0.5 17,209 - LRK53_RS18200 0.51 -1.1 17,209 - LRK53_RS18200 0.51 -2.3 17,209 - LRK53_RS18200 0.51 -0.3 17,209 - LRK53_RS18200 0.51 +0.9 17,209 - LRK53_RS18200 0.51 -0.8 17,209 - LRK53_RS18200 0.51 +0.1 17,209 - LRK53_RS18200 0.51 -0.4 17,209 - LRK53_RS18200 0.51 -0.1 17,209 - LRK53_RS18200 0.51 -0.8 17,209 - LRK53_RS18200 0.51 -2.4 17,209 - LRK53_RS18200 0.51 -1.6 17,209 - LRK53_RS18200 0.51 +0.2 17,209 - LRK53_RS18200 0.51 -0.3 17,209 - LRK53_RS18200 0.51 -2.3 17,209 - LRK53_RS18200 0.51 -2.9 17,209 - LRK53_RS18200 0.51 -0.3 17,209 - LRK53_RS18200 0.51 +0.6 17,306 + LRK53_RS18200 0.64 -0.1 17,306 + LRK53_RS18200 0.64 -0.7 17,514 - -0.8 17,707 + LRK53_RS18205 0.21 -2.4 17,707 + LRK53_RS18205 0.21 -0.5 17,707 + LRK53_RS18205 0.21 -1.5 17,707 + LRK53_RS18205 0.21 -0.1 17,708 - LRK53_RS18205 0.21 -2.1 17,708 - LRK53_RS18205 0.21 -1.3 17,873 + LRK53_RS18205 0.48 +0.1 17,874 - LRK53_RS18205 0.48 +0.7 18,001 - LRK53_RS18205 0.69 -1.3 18,001 - LRK53_RS18205 0.69 -0.0 18,001 - LRK53_RS18205 0.69 -0.9 18,022 + LRK53_RS18205 0.72 -1.4 18,022 + LRK53_RS18205 0.72 -1.8 18,022 + LRK53_RS18205 0.72 -0.3 18,022 + LRK53_RS18205 0.72 -0.0 18,070 + LRK53_RS18205 0.80 -0.1 18,405 + LRK53_RS18210 0.26 -0.7 18,405 + LRK53_RS18210 0.26 -0.8 18,406 - LRK53_RS18210 0.26 -1.6 18,496 - LRK53_RS18210 0.37 -0.8 18,717 + LRK53_RS18210 0.64 -0.9 18,882 + LRK53_RS18210 0.85 -1.3 18,882 + LRK53_RS18210 0.85 +0.4 18,883 - LRK53_RS18210 0.85 -0.5 18,883 - LRK53_RS18210 0.85 +0.0 18,883 - LRK53_RS18210 0.85 -2.2 18,903 + LRK53_RS18210 0.87 -1.4 18,903 + LRK53_RS18210 0.87 -0.3 18,903 + LRK53_RS18210 0.87 -1.3 18,903 + LRK53_RS18210 0.87 -1.8 18,903 + LRK53_RS18210 0.87 -0.7 18,903 + LRK53_RS18210 0.87 +0.5 18,904 - LRK53_RS18210 0.88 -1.5 18,904 - LRK53_RS18210 0.88 -2.1 18,904 - LRK53_RS18210 0.88 -2.0 18,904 - LRK53_RS18210 0.88 +0.2 18,904 - LRK53_RS18210 0.88 -0.9 18,904 - LRK53_RS18210 0.88 -1.9 18,904 - LRK53_RS18210 0.88 +0.5 18,904 - LRK53_RS18210 0.88 +0.1 18,957 + +0.6 18,957 + -0.2 18,958 - +0.9 19,049 - -2.6 19,049 - +1.4 19,231 + -2.1 19,231 + +0.6 19,231 + -1.7 19,232 - -1.2 19,232 - -0.4 19,238 + -0.1 19,239 - -0.7 19,239 - -0.4 19,256 + -0.9 19,256 + -0.6 19,256 + +1.2 19,257 - +0.7 19,286 + -1.1 19,286 + -0.6 19,286 + -2.0 19,287 - -1.1 19,287 - -1.7 19,467 + LRK53_RS18215 0.36 +0.6 19,467 + LRK53_RS18215 0.36 -0.7 19,468 - LRK53_RS18215 0.36 -1.9 19,468 - LRK53_RS18215 0.36 -1.6 19,468 - LRK53_RS18215 0.36 +0.5 19,491 + LRK53_RS18215 0.40 -2.8 19,492 - LRK53_RS18215 0.40 -0.5 19,492 - LRK53_RS18215 0.40 +1.1 19,521 + LRK53_RS18215 0.45 -1.5 19,521 + LRK53_RS18215 0.45 -1.3 19,521 + LRK53_RS18215 0.45 +0.4 19,521 + LRK53_RS18215 0.45 -0.3 19,521 + LRK53_RS18215 0.45 -0.3 19,522 - LRK53_RS18215 0.45 -0.1 19,522 - LRK53_RS18215 0.45 -0.0 19,522 - LRK53_RS18215 0.45 -0.1 19,522 - LRK53_RS18215 0.45 -0.6 19,522 - LRK53_RS18215 0.45 -0.4 19,522 - LRK53_RS18215 0.45 +0.1 19,522 - LRK53_RS18215 0.45 -0.4 19,723 - LRK53_RS18215 0.79 -1.3 19,835 + -0.8 19,836 - -0.7 19,836 - +0.5 19,838 - -1.5 19,845 + +0.6 19,869 - -1.9 19,869 - -1.1 19,870 + -0.7 19,893 - -0.8
Or see this region's nucleotide sequence