Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18180 and LRK53_RS18185 are separated by 75 nucleotides LRK53_RS18185 and LRK53_RS18190 overlap by 4 nucleotides LRK53_RS18190 and LRK53_RS18195 are separated by 2 nucleotides
LRK53_RS18180: LRK53_RS18180 - WGR domain-containing protein, at 13,350 to 14,474
_RS18180
LRK53_RS18185: LRK53_RS18185 - PRTRC system protein E, at 14,550 to 15,122
_RS18185
LRK53_RS18190: LRK53_RS18190 - PRTRC system protein C, at 15,119 to 15,520
_RS18190
LRK53_RS18195: LRK53_RS18195 - hypothetical protein, at 15,523 to 16,842
_RS18195
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.578 kb on + strand, within LRK53_RS18180 at 13.578 kb on + strand, within LRK53_RS18180 at 13.579 kb on - strand, within LRK53_RS18180 at 13.579 kb on - strand, within LRK53_RS18180 at 13.926 kb on + strand, within LRK53_RS18180 at 13.927 kb on - strand, within LRK53_RS18180 at 13.927 kb on - strand, within LRK53_RS18180 at 13.927 kb on - strand, within LRK53_RS18180 at 14.033 kb on - strand, within LRK53_RS18180 at 14.049 kb on + strand, within LRK53_RS18180 at 14.049 kb on + strand, within LRK53_RS18180 at 14.050 kb on - strand, within LRK53_RS18180 at 14.050 kb on - strand, within LRK53_RS18180 at 14.079 kb on + strand, within LRK53_RS18180 at 14.079 kb on + strand, within LRK53_RS18180 at 14.079 kb on + strand, within LRK53_RS18180 at 14.080 kb on - strand, within LRK53_RS18180 at 14.080 kb on - strand, within LRK53_RS18180 at 14.080 kb on - strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.139 kb on + strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.140 kb on - strand, within LRK53_RS18180 at 14.141 kb on + strand, within LRK53_RS18180 at 14.141 kb on + strand, within LRK53_RS18180 at 14.142 kb on - strand, within LRK53_RS18180 at 14.346 kb on + strand, within LRK53_RS18180 at 14.346 kb on + strand, within LRK53_RS18180 at 14.346 kb on + strand, within LRK53_RS18180 at 14.347 kb on - strand, within LRK53_RS18180 at 14.347 kb on - strand, within LRK53_RS18180 at 14.352 kb on + strand, within LRK53_RS18180 at 14.353 kb on - strand, within LRK53_RS18180 at 14.376 kb on + strand at 14.376 kb on + strand at 14.377 kb on - strand at 14.377 kb on - strand at 14.388 kb on + strand at 14.388 kb on + strand at 14.389 kb on - strand at 14.389 kb on - strand at 14.389 kb on - strand at 14.389 kb on - strand at 14.389 kb on - strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.527 kb on + strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.528 kb on - strand at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.704 kb on + strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 14.705 kb on - strand, within LRK53_RS18185 at 15.021 kb on - strand, within LRK53_RS18185 at 15.021 kb on - strand, within LRK53_RS18185 at 15.021 kb on - strand, within LRK53_RS18185 at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.135 kb on + strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.136 kb on - strand at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.227 kb on + strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.228 kb on - strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.239 kb on + strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.240 kb on - strand, within LRK53_RS18190 at 15.290 kb on + strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.291 kb on - strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.294 kb on + strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.295 kb on - strand, within LRK53_RS18190 at 15.299 kb on + strand, within LRK53_RS18190 at 15.299 kb on + strand, within LRK53_RS18190 at 16.012 kb on + strand, within LRK53_RS18195 at 16.013 kb on - strand, within LRK53_RS18195 at 16.013 kb on - strand, within LRK53_RS18195 at 16.013 kb on - strand, within LRK53_RS18195 at 16.069 kb on + strand, within LRK53_RS18195 at 16.069 kb on + strand, within LRK53_RS18195 at 16.069 kb on + strand, within LRK53_RS18195 at 16.070 kb on - strand, within LRK53_RS18195 at 16.070 kb on - strand, within LRK53_RS18195
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 13,578 + LRK53_RS18180 0.20 -0.2 13,578 + LRK53_RS18180 0.20 -0.7 13,579 - LRK53_RS18180 0.20 +0.8 13,579 - LRK53_RS18180 0.20 -0.1 13,926 + LRK53_RS18180 0.51 +0.4 13,927 - LRK53_RS18180 0.51 +0.7 13,927 - LRK53_RS18180 0.51 -0.7 13,927 - LRK53_RS18180 0.51 +0.3 14,033 - LRK53_RS18180 0.61 -0.2 14,049 + LRK53_RS18180 0.62 -0.2 14,049 + LRK53_RS18180 0.62 -0.7 14,050 - LRK53_RS18180 0.62 -1.1 14,050 - LRK53_RS18180 0.62 -2.3 14,079 + LRK53_RS18180 0.65 -2.1 14,079 + LRK53_RS18180 0.65 -1.3 14,079 + LRK53_RS18180 0.65 -0.8 14,080 - LRK53_RS18180 0.65 +0.5 14,080 - LRK53_RS18180 0.65 -1.4 14,080 - LRK53_RS18180 0.65 -0.0 14,139 + LRK53_RS18180 0.70 -0.8 14,139 + LRK53_RS18180 0.70 +1.0 14,139 + LRK53_RS18180 0.70 -0.2 14,139 + LRK53_RS18180 0.70 +0.5 14,139 + LRK53_RS18180 0.70 -1.5 14,139 + LRK53_RS18180 0.70 -1.1 14,139 + LRK53_RS18180 0.70 -0.4 14,139 + LRK53_RS18180 0.70 +0.5 14,139 + LRK53_RS18180 0.70 -1.7 14,139 + LRK53_RS18180 0.70 +0.3 14,139 + LRK53_RS18180 0.70 +1.2 14,140 - LRK53_RS18180 0.70 -1.3 14,140 - LRK53_RS18180 0.70 +0.7 14,140 - LRK53_RS18180 0.70 -1.3 14,140 - LRK53_RS18180 0.70 -0.5 14,140 - LRK53_RS18180 0.70 -0.8 14,140 - LRK53_RS18180 0.70 -0.6 14,140 - LRK53_RS18180 0.70 -1.7 14,140 - LRK53_RS18180 0.70 +0.6 14,140 - LRK53_RS18180 0.70 +0.0 14,141 + LRK53_RS18180 0.70 -2.7 14,141 + LRK53_RS18180 0.70 +0.8 14,142 - LRK53_RS18180 0.70 -2.6 14,346 + LRK53_RS18180 0.89 -0.0 14,346 + LRK53_RS18180 0.89 -2.9 14,346 + LRK53_RS18180 0.89 +0.7 14,347 - LRK53_RS18180 0.89 +0.2 14,347 - LRK53_RS18180 0.89 -0.9 14,352 + LRK53_RS18180 0.89 -0.4 14,353 - LRK53_RS18180 0.89 -2.5 14,376 + +0.2 14,376 + -1.9 14,377 - -0.8 14,377 - -0.3 14,388 + +1.0 14,388 + -0.8 14,389 - -1.7 14,389 - +1.2 14,389 - +0.3 14,389 - -0.8 14,389 - -1.7 14,527 + +0.7 14,527 + +0.1 14,527 + +0.1 14,527 + +0.2 14,527 + +0.6 14,527 + +0.2 14,527 + -1.5 14,528 - -0.4 14,528 - -1.1 14,528 - -0.3 14,528 - -0.5 14,528 - -1.5 14,528 - -0.8 14,528 - +0.7 14,528 - -0.3 14,528 - -0.4 14,528 - -0.6 14,704 + LRK53_RS18185 0.27 -0.5 14,704 + LRK53_RS18185 0.27 -0.1 14,704 + LRK53_RS18185 0.27 -0.5 14,704 + LRK53_RS18185 0.27 -0.5 14,704 + LRK53_RS18185 0.27 -0.4 14,704 + LRK53_RS18185 0.27 -1.8 14,704 + LRK53_RS18185 0.27 +0.1 14,704 + LRK53_RS18185 0.27 -0.3 14,704 + LRK53_RS18185 0.27 -2.1 14,704 + LRK53_RS18185 0.27 -1.8 14,704 + LRK53_RS18185 0.27 +1.3 14,704 + LRK53_RS18185 0.27 -0.2 14,704 + LRK53_RS18185 0.27 +0.5 14,704 + LRK53_RS18185 0.27 -2.6 14,705 - LRK53_RS18185 0.27 -0.6 14,705 - LRK53_RS18185 0.27 +0.4 14,705 - LRK53_RS18185 0.27 -2.2 14,705 - LRK53_RS18185 0.27 +0.5 14,705 - LRK53_RS18185 0.27 -1.4 14,705 - LRK53_RS18185 0.27 +0.2 14,705 - LRK53_RS18185 0.27 -0.4 14,705 - LRK53_RS18185 0.27 -0.8 14,705 - LRK53_RS18185 0.27 +0.9 14,705 - LRK53_RS18185 0.27 -0.2 15,021 - LRK53_RS18185 0.82 +0.5 15,021 - LRK53_RS18185 0.82 +2.7 15,021 - LRK53_RS18185 0.82 +1.3 15,135 + +0.7 15,135 + -2.2 15,135 + -2.1 15,135 + +1.5 15,135 + +0.7 15,135 + -2.2 15,135 + -0.8 15,135 + -1.5 15,135 + -1.5 15,135 + -0.3 15,135 + +0.2 15,135 + -1.3 15,135 + -0.3 15,135 + +0.4 15,135 + -1.1 15,135 + +0.0 15,135 + -0.4 15,135 + -0.3 15,136 - -0.3 15,136 - +0.1 15,136 - +0.1 15,136 - -2.2 15,136 - -0.5 15,136 - +1.4 15,136 - -0.9 15,136 - +1.9 15,136 - -0.7 15,136 - +0.2 15,136 - -1.2 15,136 - +1.0 15,136 - +1.5 15,136 - -1.9 15,136 - +0.3 15,227 + LRK53_RS18190 0.27 -0.8 15,227 + LRK53_RS18190 0.27 +0.1 15,227 + LRK53_RS18190 0.27 +0.4 15,227 + LRK53_RS18190 0.27 +1.0 15,227 + LRK53_RS18190 0.27 +0.4 15,227 + LRK53_RS18190 0.27 -0.1 15,227 + LRK53_RS18190 0.27 -0.4 15,227 + LRK53_RS18190 0.27 +0.2 15,227 + LRK53_RS18190 0.27 -0.3 15,227 + LRK53_RS18190 0.27 +0.3 15,227 + LRK53_RS18190 0.27 -2.1 15,228 - LRK53_RS18190 0.27 -0.0 15,228 - LRK53_RS18190 0.27 -0.6 15,228 - LRK53_RS18190 0.27 -0.2 15,228 - LRK53_RS18190 0.27 -0.5 15,228 - LRK53_RS18190 0.27 +1.9 15,228 - LRK53_RS18190 0.27 -1.1 15,228 - LRK53_RS18190 0.27 -1.0 15,228 - LRK53_RS18190 0.27 -2.1 15,228 - LRK53_RS18190 0.27 -0.5 15,228 - LRK53_RS18190 0.27 -0.4 15,228 - LRK53_RS18190 0.27 -1.1 15,228 - LRK53_RS18190 0.27 -0.1 15,228 - LRK53_RS18190 0.27 -0.8 15,228 - LRK53_RS18190 0.27 -2.3 15,228 - LRK53_RS18190 0.27 -0.5 15,239 + LRK53_RS18190 0.30 +0.9 15,239 + LRK53_RS18190 0.30 +1.5 15,239 + LRK53_RS18190 0.30 +0.3 15,239 + LRK53_RS18190 0.30 +1.4 15,239 + LRK53_RS18190 0.30 -2.3 15,239 + LRK53_RS18190 0.30 +0.3 15,239 + LRK53_RS18190 0.30 +0.1 15,240 - LRK53_RS18190 0.30 -0.2 15,240 - LRK53_RS18190 0.30 -1.1 15,240 - LRK53_RS18190 0.30 -1.3 15,240 - LRK53_RS18190 0.30 -2.4 15,240 - LRK53_RS18190 0.30 -0.2 15,240 - LRK53_RS18190 0.30 -0.5 15,290 + LRK53_RS18190 0.43 -1.5 15,291 - LRK53_RS18190 0.43 +2.5 15,291 - LRK53_RS18190 0.43 -1.2 15,291 - LRK53_RS18190 0.43 -0.1 15,291 - LRK53_RS18190 0.43 -1.8 15,291 - LRK53_RS18190 0.43 -0.2 15,291 - LRK53_RS18190 0.43 -0.7 15,291 - LRK53_RS18190 0.43 +0.3 15,294 + LRK53_RS18190 0.44 -0.9 15,294 + LRK53_RS18190 0.44 -0.3 15,294 + LRK53_RS18190 0.44 +0.2 15,294 + LRK53_RS18190 0.44 -0.9 15,294 + LRK53_RS18190 0.44 -0.1 15,294 + LRK53_RS18190 0.44 -1.1 15,294 + LRK53_RS18190 0.44 -3.3 15,295 - LRK53_RS18190 0.44 -0.8 15,295 - LRK53_RS18190 0.44 -1.1 15,295 - LRK53_RS18190 0.44 -0.5 15,295 - LRK53_RS18190 0.44 -1.4 15,295 - LRK53_RS18190 0.44 -2.7 15,295 - LRK53_RS18190 0.44 -0.2 15,299 + LRK53_RS18190 0.45 +0.1 15,299 + LRK53_RS18190 0.45 -1.1 16,012 + LRK53_RS18195 0.37 +0.5 16,013 - LRK53_RS18195 0.37 -0.6 16,013 - LRK53_RS18195 0.37 -1.1 16,013 - LRK53_RS18195 0.37 -0.9 16,069 + LRK53_RS18195 0.41 -1.1 16,069 + LRK53_RS18195 0.41 -0.1 16,069 + LRK53_RS18195 0.41 -0.3 16,070 - LRK53_RS18195 0.41 -1.9 16,070 - LRK53_RS18195 0.41 -1.7
Or see this region's nucleotide sequence