Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15880

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15870 and LRK53_RS15875 are separated by 141 nucleotidesLRK53_RS15875 and LRK53_RS15880 are separated by 230 nucleotidesLRK53_RS15880 and LRK53_RS15885 are separated by 79 nucleotides LRK53_RS15870: LRK53_RS15870 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,470,640 to 3,472,775 _RS15870 LRK53_RS15875: LRK53_RS15875 - hypothetical protein, at 3,472,917 to 3,473,396 _RS15875 LRK53_RS15880: LRK53_RS15880 - IS5 family transposase, at 3,473,627 to 3,474,757 _RS15880 LRK53_RS15885: LRK53_RS15885 - ATP-dependent RNA helicase HrpA, at 3,474,837 to 3,478,868 _RS15885 Position (kb) 3473 3474 3475Strain fitness (log2 ratio) -2 -1 0 1at 3472.808 kb on + strandat 3473.095 kb on + strand, within LRK53_RS15875at 3473.096 kb on - strand, within LRK53_RS15875at 3473.154 kb on + strand, within LRK53_RS15875at 3473.154 kb on + strand, within LRK53_RS15875at 3473.155 kb on - strand, within LRK53_RS15875at 3473.155 kb on - strand, within LRK53_RS15875at 3473.155 kb on - strand, within LRK53_RS15875at 3473.155 kb on - strand, within LRK53_RS15875at 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.349 kb on + strandat 3473.350 kb on - strandat 3473.350 kb on - strandat 3473.350 kb on - strandat 3473.350 kb on - strandat 3473.350 kb on - strandat 3473.350 kb on - strandat 3473.889 kb on - strand, within LRK53_RS15880at 3473.889 kb on - strand, within LRK53_RS15880at 3473.889 kb on - strand, within LRK53_RS15880at 3473.889 kb on - strand, within LRK53_RS15880at 3474.994 kb on + strandat 3474.995 kb on - strandat 3475.007 kb on - strandat 3475.090 kb on + strandat 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.429 kb on + strand, within LRK53_RS15885at 3475.430 kb on - strand, within LRK53_RS15885at 3475.430 kb on - strand, within LRK53_RS15885at 3475.430 kb on - strand, within LRK53_RS15885at 3475.430 kb on - strand, within LRK53_RS15885at 3475.430 kb on - strand, within LRK53_RS15885

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,472,808 + -2.2
3,473,095 + LRK53_RS15875 0.37 +1.4
3,473,096 - LRK53_RS15875 0.37 -0.8
3,473,154 + LRK53_RS15875 0.49 +0.6
3,473,154 + LRK53_RS15875 0.49 -1.5
3,473,155 - LRK53_RS15875 0.50 +0.8
3,473,155 - LRK53_RS15875 0.50 -0.3
3,473,155 - LRK53_RS15875 0.50 -0.9
3,473,155 - LRK53_RS15875 0.50 -0.6
3,473,349 + -0.4
3,473,349 + +0.6
3,473,349 + +1.3
3,473,349 + -1.1
3,473,349 + +0.2
3,473,349 + +0.9
3,473,349 + -0.8
3,473,349 + -1.6
3,473,350 - +0.1
3,473,350 - +0.6
3,473,350 - +0.3
3,473,350 - -1.1
3,473,350 - +0.0
3,473,350 - -0.4
3,473,889 - LRK53_RS15880 0.23 +0.1
3,473,889 - LRK53_RS15880 0.23 -1.0
3,473,889 - LRK53_RS15880 0.23 -1.0
3,473,889 - LRK53_RS15880 0.23 -0.5
3,474,994 + -0.8
3,474,995 - -2.4
3,475,007 - -1.0
3,475,090 + -0.5
3,475,429 + LRK53_RS15885 0.15 -0.6
3,475,429 + LRK53_RS15885 0.15 +0.2
3,475,429 + LRK53_RS15885 0.15 +0.2
3,475,429 + LRK53_RS15885 0.15 -0.8
3,475,429 + LRK53_RS15885 0.15 -0.8
3,475,429 + LRK53_RS15885 0.15 -1.2
3,475,429 + LRK53_RS15885 0.15 +0.4
3,475,429 + LRK53_RS15885 0.15 -0.0
3,475,429 + LRK53_RS15885 0.15 +0.1
3,475,429 + LRK53_RS15885 0.15 -0.1
3,475,430 - LRK53_RS15885 0.15 +0.2
3,475,430 - LRK53_RS15885 0.15 +0.2
3,475,430 - LRK53_RS15885 0.15 -0.6
3,475,430 - LRK53_RS15885 0.15 +0.2
3,475,430 - LRK53_RS15885 0.15 -1.8

Or see this region's nucleotide sequence