Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15860

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15855 and LRK53_RS15860 are separated by 18 nucleotidesLRK53_RS15860 and LRK53_RS15865 are separated by 7 nucleotides LRK53_RS15855: LRK53_RS15855 - IS110 family transposase, at 3,466,960 to 3,467,982 _RS15855 LRK53_RS15860: LRK53_RS15860 - NAD-dependent epimerase/dehydratase family protein, at 3,468,001 to 3,468,840 _RS15860 LRK53_RS15865: LRK53_RS15865 - hypothetical protein, at 3,468,848 to 3,470,554 _RS15865 Position (kb) 3468 3469Strain fitness (log2 ratio) -2 -1 0 1at 3467.980 kb on + strandat 3467.980 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3467.998 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.002 kb on + strandat 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.328 kb on + strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.329 kb on - strand, within LRK53_RS15860at 3468.331 kb on - strand, within LRK53_RS15860at 3468.833 kb on - strandat 3468.833 kb on - strandat 3469.197 kb on + strand, within LRK53_RS15865at 3469.197 kb on + strand, within LRK53_RS15865at 3469.198 kb on - strand, within LRK53_RS15865

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,467,980 + -0.8
3,467,980 + +0.8
3,467,998 + +1.0
3,467,998 + -2.0
3,467,998 + -1.0
3,467,998 + +0.1
3,467,998 + -0.7
3,467,998 + -0.3
3,467,998 + -0.2
3,467,998 + +0.2
3,467,998 + -0.2
3,467,998 + +0.6
3,467,998 + -1.1
3,467,998 + -2.2
3,467,998 + +1.1
3,467,998 + -1.4
3,468,002 + -1.4
3,468,002 + -0.2
3,468,002 + +0.7
3,468,002 + +0.8
3,468,002 + -0.8
3,468,002 + +1.0
3,468,002 + -1.8
3,468,002 + -0.2
3,468,002 + -0.7
3,468,328 + LRK53_RS15860 0.39 -0.9
3,468,328 + LRK53_RS15860 0.39 -0.8
3,468,328 + LRK53_RS15860 0.39 -0.0
3,468,328 + LRK53_RS15860 0.39 -0.5
3,468,328 + LRK53_RS15860 0.39 -1.2
3,468,328 + LRK53_RS15860 0.39 -0.2
3,468,328 + LRK53_RS15860 0.39 +1.3
3,468,328 + LRK53_RS15860 0.39 -1.2
3,468,328 + LRK53_RS15860 0.39 -0.7
3,468,328 + LRK53_RS15860 0.39 -1.0
3,468,328 + LRK53_RS15860 0.39 +0.4
3,468,328 + LRK53_RS15860 0.39 -0.9
3,468,328 + LRK53_RS15860 0.39 -0.3
3,468,328 + LRK53_RS15860 0.39 -2.5
3,468,328 + LRK53_RS15860 0.39 -1.5
3,468,328 + LRK53_RS15860 0.39 -1.9
3,468,329 - LRK53_RS15860 0.39 -1.2
3,468,329 - LRK53_RS15860 0.39 +0.1
3,468,329 - LRK53_RS15860 0.39 -0.0
3,468,329 - LRK53_RS15860 0.39 -1.7
3,468,329 - LRK53_RS15860 0.39 -2.1
3,468,329 - LRK53_RS15860 0.39 +0.6
3,468,331 - LRK53_RS15860 0.39 -1.1
3,468,833 - -0.7
3,468,833 - -0.8
3,469,197 + LRK53_RS15865 0.20 -2.0
3,469,197 + LRK53_RS15865 0.20 -0.2
3,469,198 - LRK53_RS15865 0.21 -0.1

Or see this region's nucleotide sequence