Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14430

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14425 and LRK53_RS14430 are separated by 30 nucleotidesLRK53_RS14430 and LRK53_RS14435 overlap by 8 nucleotidesLRK53_RS14435 and LRK53_RS14440 are separated by 112 nucleotides LRK53_RS14425: LRK53_RS14425 - ABC transporter permease, at 3,161,013 to 3,162,131 _RS14425 LRK53_RS14430: LRK53_RS14430 - efflux transporter outer membrane subunit, at 3,162,162 to 3,163,676 _RS14430 LRK53_RS14435: LRK53_RS14435 - hypothetical protein, at 3,163,669 to 3,164,277 _RS14435 LRK53_RS14440: LRK53_RS14440 - MBL fold metallo-hydrolase, at 3,164,390 to 3,165,811 _RS14440 Position (kb) 3162 3163 3164Strain fitness (log2 ratio) -2 -1 0 1 2at 3161.187 kb on + strand, within LRK53_RS14425at 3161.187 kb on + strand, within LRK53_RS14425at 3161.187 kb on + strand, within LRK53_RS14425at 3161.187 kb on + strand, within LRK53_RS14425at 3161.187 kb on + strand, within LRK53_RS14425at 3161.187 kb on + strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.188 kb on - strand, within LRK53_RS14425at 3161.214 kb on + strand, within LRK53_RS14425at 3161.214 kb on + strand, within LRK53_RS14425at 3161.215 kb on - strand, within LRK53_RS14425at 3161.215 kb on - strand, within LRK53_RS14425at 3161.215 kb on - strand, within LRK53_RS14425at 3161.433 kb on + strand, within LRK53_RS14425at 3161.433 kb on + strand, within LRK53_RS14425at 3161.434 kb on - strand, within LRK53_RS14425at 3161.434 kb on - strand, within LRK53_RS14425at 3161.536 kb on - strand, within LRK53_RS14425at 3162.113 kb on - strandat 3162.432 kb on - strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.643 kb on + strand, within LRK53_RS14430at 3162.644 kb on - strand, within LRK53_RS14430at 3162.644 kb on - strand, within LRK53_RS14430at 3162.644 kb on - strand, within LRK53_RS14430at 3162.729 kb on + strand, within LRK53_RS14430at 3162.729 kb on + strand, within LRK53_RS14430at 3162.729 kb on + strand, within LRK53_RS14430at 3162.730 kb on - strand, within LRK53_RS14430at 3162.730 kb on - strand, within LRK53_RS14430at 3162.730 kb on - strand, within LRK53_RS14430at 3162.730 kb on - strand, within LRK53_RS14430at 3162.730 kb on - strand, within LRK53_RS14430at 3163.365 kb on + strand, within LRK53_RS14430at 3163.366 kb on - strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.428 kb on + strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.429 kb on - strand, within LRK53_RS14430at 3163.449 kb on + strand, within LRK53_RS14430at 3163.449 kb on + strand, within LRK53_RS14430at 3163.521 kb on + strand, within LRK53_RS14430at 3163.521 kb on + strand, within LRK53_RS14430at 3163.522 kb on - strand, within LRK53_RS14430at 3163.522 kb on - strand, within LRK53_RS14430at 3163.536 kb on - strandat 3163.536 kb on - strandat 3163.628 kb on - strandat 3164.167 kb on + strand, within LRK53_RS14435at 3164.167 kb on + strand, within LRK53_RS14435at 3164.167 kb on + strand, within LRK53_RS14435at 3164.168 kb on - strand, within LRK53_RS14435at 3164.168 kb on - strand, within LRK53_RS14435at 3164.168 kb on - strand, within LRK53_RS14435at 3164.176 kb on + strand, within LRK53_RS14435at 3164.177 kb on - strand, within LRK53_RS14435

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,161,187 + LRK53_RS14425 0.16 -0.9
3,161,187 + LRK53_RS14425 0.16 -1.6
3,161,187 + LRK53_RS14425 0.16 -0.8
3,161,187 + LRK53_RS14425 0.16 -1.7
3,161,187 + LRK53_RS14425 0.16 -1.3
3,161,187 + LRK53_RS14425 0.16 -0.6
3,161,188 - LRK53_RS14425 0.16 -0.8
3,161,188 - LRK53_RS14425 0.16 -0.1
3,161,188 - LRK53_RS14425 0.16 -1.6
3,161,188 - LRK53_RS14425 0.16 -1.6
3,161,188 - LRK53_RS14425 0.16 -1.3
3,161,188 - LRK53_RS14425 0.16 -0.4
3,161,188 - LRK53_RS14425 0.16 +2.7
3,161,214 + LRK53_RS14425 0.18 -0.8
3,161,214 + LRK53_RS14425 0.18 -0.1
3,161,215 - LRK53_RS14425 0.18 -1.0
3,161,215 - LRK53_RS14425 0.18 -2.7
3,161,215 - LRK53_RS14425 0.18 +1.9
3,161,433 + LRK53_RS14425 0.38 +0.4
3,161,433 + LRK53_RS14425 0.38 -1.9
3,161,434 - LRK53_RS14425 0.38 -0.3
3,161,434 - LRK53_RS14425 0.38 +1.0
3,161,536 - LRK53_RS14425 0.47 +1.6
3,162,113 - -0.5
3,162,432 - LRK53_RS14430 0.18 -0.6
3,162,643 + LRK53_RS14430 0.32 -0.3
3,162,643 + LRK53_RS14430 0.32 +0.3
3,162,643 + LRK53_RS14430 0.32 +0.1
3,162,643 + LRK53_RS14430 0.32 -0.9
3,162,643 + LRK53_RS14430 0.32 -1.9
3,162,643 + LRK53_RS14430 0.32 +0.8
3,162,643 + LRK53_RS14430 0.32 -0.8
3,162,644 - LRK53_RS14430 0.32 -0.0
3,162,644 - LRK53_RS14430 0.32 -1.2
3,162,644 - LRK53_RS14430 0.32 -0.2
3,162,729 + LRK53_RS14430 0.37 -1.4
3,162,729 + LRK53_RS14430 0.37 -1.3
3,162,729 + LRK53_RS14430 0.37 -0.5
3,162,730 - LRK53_RS14430 0.37 -0.8
3,162,730 - LRK53_RS14430 0.37 -2.4
3,162,730 - LRK53_RS14430 0.37 -1.7
3,162,730 - LRK53_RS14430 0.37 -1.1
3,162,730 - LRK53_RS14430 0.37 +0.4
3,163,365 + LRK53_RS14430 0.79 -0.7
3,163,366 - LRK53_RS14430 0.79 +1.5
3,163,428 + LRK53_RS14430 0.84 -0.9
3,163,428 + LRK53_RS14430 0.84 -0.4
3,163,428 + LRK53_RS14430 0.84 -0.5
3,163,428 + LRK53_RS14430 0.84 -0.9
3,163,428 + LRK53_RS14430 0.84 -0.2
3,163,428 + LRK53_RS14430 0.84 +0.2
3,163,428 + LRK53_RS14430 0.84 -0.5
3,163,428 + LRK53_RS14430 0.84 -2.2
3,163,428 + LRK53_RS14430 0.84 -0.8
3,163,428 + LRK53_RS14430 0.84 -0.8
3,163,428 + LRK53_RS14430 0.84 +0.2
3,163,428 + LRK53_RS14430 0.84 -0.1
3,163,429 - LRK53_RS14430 0.84 -0.8
3,163,429 - LRK53_RS14430 0.84 -0.7
3,163,429 - LRK53_RS14430 0.84 -1.6
3,163,429 - LRK53_RS14430 0.84 -0.9
3,163,429 - LRK53_RS14430 0.84 +1.5
3,163,429 - LRK53_RS14430 0.84 -0.6
3,163,429 - LRK53_RS14430 0.84 -1.3
3,163,429 - LRK53_RS14430 0.84 +0.7
3,163,449 + LRK53_RS14430 0.85 -1.4
3,163,449 + LRK53_RS14430 0.85 +0.6
3,163,521 + LRK53_RS14430 0.90 +0.4
3,163,521 + LRK53_RS14430 0.90 -1.2
3,163,522 - LRK53_RS14430 0.90 -0.9
3,163,522 - LRK53_RS14430 0.90 +1.1
3,163,536 - +1.4
3,163,536 - +0.1
3,163,628 - -0.7
3,164,167 + LRK53_RS14435 0.82 +0.7
3,164,167 + LRK53_RS14435 0.82 +0.5
3,164,167 + LRK53_RS14435 0.82 +0.2
3,164,168 - LRK53_RS14435 0.82 +0.3
3,164,168 - LRK53_RS14435 0.82 -0.2
3,164,168 - LRK53_RS14435 0.82 -0.4
3,164,176 + LRK53_RS14435 0.83 -1.7
3,164,177 - LRK53_RS14435 0.83 +0.2

Or see this region's nucleotide sequence