Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14425 and LRK53_RS14430 are separated by 30 nucleotides LRK53_RS14430 and LRK53_RS14435 overlap by 8 nucleotides LRK53_RS14435 and LRK53_RS14440 are separated by 112 nucleotides
LRK53_RS14425: LRK53_RS14425 - ABC transporter permease, at 3,161,013 to 3,162,131
_RS14425
LRK53_RS14430: LRK53_RS14430 - efflux transporter outer membrane subunit, at 3,162,162 to 3,163,676
_RS14430
LRK53_RS14435: LRK53_RS14435 - hypothetical protein, at 3,163,669 to 3,164,277
_RS14435
LRK53_RS14440: LRK53_RS14440 - MBL fold metallo-hydrolase, at 3,164,390 to 3,165,811
_RS14440
Position (kb)
3162
3163
3164 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.187 kb on + strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.188 kb on - strand, within LRK53_RS14425 at 3161.214 kb on + strand, within LRK53_RS14425 at 3161.214 kb on + strand, within LRK53_RS14425 at 3161.215 kb on - strand, within LRK53_RS14425 at 3161.215 kb on - strand, within LRK53_RS14425 at 3161.215 kb on - strand, within LRK53_RS14425 at 3161.433 kb on + strand, within LRK53_RS14425 at 3161.433 kb on + strand, within LRK53_RS14425 at 3161.434 kb on - strand, within LRK53_RS14425 at 3161.434 kb on - strand, within LRK53_RS14425 at 3161.536 kb on - strand, within LRK53_RS14425 at 3162.113 kb on - strand at 3162.432 kb on - strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.643 kb on + strand, within LRK53_RS14430 at 3162.644 kb on - strand, within LRK53_RS14430 at 3162.644 kb on - strand, within LRK53_RS14430 at 3162.644 kb on - strand, within LRK53_RS14430 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3163.365 kb on + strand, within LRK53_RS14430 at 3163.366 kb on - strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.449 kb on + strand, within LRK53_RS14430 at 3163.449 kb on + strand, within LRK53_RS14430 at 3163.521 kb on + strand, within LRK53_RS14430 at 3163.521 kb on + strand, within LRK53_RS14430 at 3163.522 kb on - strand, within LRK53_RS14430 at 3163.522 kb on - strand, within LRK53_RS14430 at 3163.536 kb on - strand at 3163.536 kb on - strand at 3163.628 kb on - strand at 3164.167 kb on + strand, within LRK53_RS14435 at 3164.167 kb on + strand, within LRK53_RS14435 at 3164.167 kb on + strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.176 kb on + strand, within LRK53_RS14435 at 3164.177 kb on - strand, within LRK53_RS14435
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,161,187 + LRK53_RS14425 0.16 -0.9 3,161,187 + LRK53_RS14425 0.16 -1.6 3,161,187 + LRK53_RS14425 0.16 -0.8 3,161,187 + LRK53_RS14425 0.16 -1.7 3,161,187 + LRK53_RS14425 0.16 -1.3 3,161,187 + LRK53_RS14425 0.16 -0.6 3,161,188 - LRK53_RS14425 0.16 -0.8 3,161,188 - LRK53_RS14425 0.16 -0.1 3,161,188 - LRK53_RS14425 0.16 -1.6 3,161,188 - LRK53_RS14425 0.16 -1.6 3,161,188 - LRK53_RS14425 0.16 -1.3 3,161,188 - LRK53_RS14425 0.16 -0.4 3,161,188 - LRK53_RS14425 0.16 +2.7 3,161,214 + LRK53_RS14425 0.18 -0.8 3,161,214 + LRK53_RS14425 0.18 -0.1 3,161,215 - LRK53_RS14425 0.18 -1.0 3,161,215 - LRK53_RS14425 0.18 -2.7 3,161,215 - LRK53_RS14425 0.18 +1.9 3,161,433 + LRK53_RS14425 0.38 +0.4 3,161,433 + LRK53_RS14425 0.38 -1.9 3,161,434 - LRK53_RS14425 0.38 -0.3 3,161,434 - LRK53_RS14425 0.38 +1.0 3,161,536 - LRK53_RS14425 0.47 +1.6 3,162,113 - -0.5 3,162,432 - LRK53_RS14430 0.18 -0.6 3,162,643 + LRK53_RS14430 0.32 -0.3 3,162,643 + LRK53_RS14430 0.32 +0.3 3,162,643 + LRK53_RS14430 0.32 +0.1 3,162,643 + LRK53_RS14430 0.32 -0.9 3,162,643 + LRK53_RS14430 0.32 -1.9 3,162,643 + LRK53_RS14430 0.32 +0.8 3,162,643 + LRK53_RS14430 0.32 -0.8 3,162,644 - LRK53_RS14430 0.32 -0.0 3,162,644 - LRK53_RS14430 0.32 -1.2 3,162,644 - LRK53_RS14430 0.32 -0.2 3,162,729 + LRK53_RS14430 0.37 -1.4 3,162,729 + LRK53_RS14430 0.37 -1.3 3,162,729 + LRK53_RS14430 0.37 -0.5 3,162,730 - LRK53_RS14430 0.37 -0.8 3,162,730 - LRK53_RS14430 0.37 -2.4 3,162,730 - LRK53_RS14430 0.37 -1.7 3,162,730 - LRK53_RS14430 0.37 -1.1 3,162,730 - LRK53_RS14430 0.37 +0.4 3,163,365 + LRK53_RS14430 0.79 -0.7 3,163,366 - LRK53_RS14430 0.79 +1.5 3,163,428 + LRK53_RS14430 0.84 -0.9 3,163,428 + LRK53_RS14430 0.84 -0.4 3,163,428 + LRK53_RS14430 0.84 -0.5 3,163,428 + LRK53_RS14430 0.84 -0.9 3,163,428 + LRK53_RS14430 0.84 -0.2 3,163,428 + LRK53_RS14430 0.84 +0.2 3,163,428 + LRK53_RS14430 0.84 -0.5 3,163,428 + LRK53_RS14430 0.84 -2.2 3,163,428 + LRK53_RS14430 0.84 -0.8 3,163,428 + LRK53_RS14430 0.84 -0.8 3,163,428 + LRK53_RS14430 0.84 +0.2 3,163,428 + LRK53_RS14430 0.84 -0.1 3,163,429 - LRK53_RS14430 0.84 -0.8 3,163,429 - LRK53_RS14430 0.84 -0.7 3,163,429 - LRK53_RS14430 0.84 -1.6 3,163,429 - LRK53_RS14430 0.84 -0.9 3,163,429 - LRK53_RS14430 0.84 +1.5 3,163,429 - LRK53_RS14430 0.84 -0.6 3,163,429 - LRK53_RS14430 0.84 -1.3 3,163,429 - LRK53_RS14430 0.84 +0.7 3,163,449 + LRK53_RS14430 0.85 -1.4 3,163,449 + LRK53_RS14430 0.85 +0.6 3,163,521 + LRK53_RS14430 0.90 +0.4 3,163,521 + LRK53_RS14430 0.90 -1.2 3,163,522 - LRK53_RS14430 0.90 -0.9 3,163,522 - LRK53_RS14430 0.90 +1.1 3,163,536 - +1.4 3,163,536 - +0.1 3,163,628 - -0.7 3,164,167 + LRK53_RS14435 0.82 +0.7 3,164,167 + LRK53_RS14435 0.82 +0.5 3,164,167 + LRK53_RS14435 0.82 +0.2 3,164,168 - LRK53_RS14435 0.82 +0.3 3,164,168 - LRK53_RS14435 0.82 -0.2 3,164,168 - LRK53_RS14435 0.82 -0.4 3,164,176 + LRK53_RS14435 0.83 -1.7 3,164,177 - LRK53_RS14435 0.83 +0.2
Or see this region's nucleotide sequence